Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2166 ATGACGGACATGGACCCTCCTCCCAAGAGCTGGAGCATCTACACCCGAGCTGAGATTCTGGCCAAGTACCAAGTCATGGAACGGGTCGGCTCTGGAACTTACTCCGACGTCTACAAAGGCCGCCGTCTCTGCGATGATCTGATCGTCGCCCTCAAAGAAGTTCACGATTACCAATCTGCCATGCGAGAAATCGAGGCCTTGCAGATCCTCCAGGGGTCCCCAAACGTCGTCGTCTTGCACGAGTATTTCTGGCGCGAGGACGAGGACGCCGTCCTCGTTCTTGAGTTTTTGAGAACTGACTTGTTGACGGTCATCAAAGAGGCCAAGAAGGAGGGTGCGGGTCTAAGCGTTGGGGAGATTAAGCAGTGGATGATCCAGATTCTTTGCGGCGTCGATGCGTGCCACACAAATATGATCATGCATCGAGATTTGAAGCCCAGTAATTTATTGATTTCGGAGGATGGCGTGCTAAAGTTGGCTGATTTTGGACAGGCACGGATATTTATGGAGCCTGGATTTCATGCTATGGATGAAAACCCACCACCATATGAAGACGATATTTCACATGAGAGATCTTTTCAACATCCTGAAGCATTTCCTCAGACACACGACCAAAACCAAGAAAGCTATGGAAATCAGGAACAGAGAGCTGTAACTCAAGATGAATATTATAGAGTATTAGATGAGATAAAAACTAAGAGCTCCACAGATGACATGGATAAGGATACGAACTTCCAGGATGGAAATACATCTTGTCTTGCAACTTGCACAATAAGTGATATAGAAGATGATTTTATGAAGGGTTCGTTTACTTATGAAGCAGATGTCAGAGACAATGAAGAAGGTGGTCTCACATCATGTGTTGGAACCCGATGGTACAGGTCTCCTGAACTGCTTTATGGATCAGATGACTATGGGTTAGAGATTGATCTCTGGTCATTGGGCTGCATCTTTGCAGAGCTCCTAACTCTGGAGCCCTTATTTACAGGGACAAGTGATATTGATCAGCTCAGTAGAATTATTGACGTTTTAGGCAACCTCAATGAGGAAGTTTGGCCTGCTTGTTCCAAGCTTCCTGATTATGAAAAAATCTCTTTCACTAAGGTGGAGAACCCTCCAGGTATCGAAGGCTGCCTGCCCAACCGATCGCCTGATGAAGTCTCTCTAGTGACGAAATTGGTTTGTTATGATCCGGCTAGAAGAGCTACAGCAATGGAGCTTCTCCAGGACAAGTATTTTGGTGAAGAACCTCTTCCTGTGCCTATTTCTAAGCTGCGAGTTCCTTTGACAAGAAGTGCACACGATGAAGACTCTCATAATCTTGATGATCTGGATTTATCTGATTATGAGGACTTTAACCCAGTGAATGTCATCAAAACTGGCACTGGTTTCTCTATACGATTTCCTTGA 1410 0.4553 MTDMDPPPKSWSIYTRAEILAKYQVMERVGSGTYSDVYKGRRLCDDLIVALKEVHDYQSAMREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLLTVIKEAKKEGAGLSVGEIKQWMIQILCGVDACHTNMIMHRDLKPSNLLISEDGVLKLADFGQARIFMEPGFHAMDENPPPYEDDISHERSFQHPEAFPQTHDQNQESYGNQEQRAVTQDEYYRVLDEIKTKSSTDDMDKDTNFQDGNTSCLATCTISDIEDDFMKGSFTYEADVRDNEEGGLTSCVGTRWYRSPELLYGSDDYGLEIDLWSLGCIFAELLTLEPLFTGTSDIDQLSRIIDVLGNLNEEVWPACSKLPDYEKISFTKVENPPGIEGCLPNRSPDEVSLVTKLVCYDPARRATAMELLQDKYFGEEPLPVPISKLRVPLTRSAHDEDSHNLDDLDLSDYEDFNPVNVIKTGTGFSIRFP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2166 469 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Alju01g2166 469 ProSiteProfiles Protein kinase domain profile. 23 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g2166 469 Gene3D Transferase(Phosphotransferase) domain 1 15 212 - -
Alju01g2166 469 SUPERFAMILY Protein kinase-like (PK-like) 7 441 IPR011009 -
Alju01g2166 469 FunFam Cyclin-dependent kinase F-1 14 108 - -
Alju01g2166 469 SMART serkin_6 23 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g2166 469 Pfam Protein kinase domain 281 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g2166 469 Pfam Protein kinase domain 23 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g2166 469 Gene3D Transferase(Phosphotransferase) domain 1 250 421 - -
Alju01g2166 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Alju01g2166 469 PANTHER CELL DIVISION PROTEIN KINASE 22 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2166 Alju-ChrAlju01 18643100 18644997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2166 7 469 Core Cell Cycle Gene Families AT4G28980 61.263 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Alju01g2166 Pkinase 8.9e-33 CL0016