Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2162 ATGACCACCACCACCACCACTTCTTCTCAGATCCTTCAACGCACCACCGACTTCCTCTCCGACGTCCTTTCGCATTCCGAACTCCGACGTCGCCTCATTTCCACCCTCCTTCTTCACTCTTCAATCTCCAACCAAATTACCCTCAAACACCTCAATCTCGCCGCGGACACTCTCGATAATGCTATCTCCGTCTCCAGCCCCACCATCCGAACCTCCTCCTTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTTCCTCAGAATCCCATTTCGTCTTTCCTTCTATCTCTCATATACACGATCAACAAACGACAAGTTGAAGCCGCCTTAAGTCTCTTTCAACTCTTTTATTTGAGCCCTTCTTTGGCCCGATCGGAAATCGCTCCGATTATATACGAGCAGCTGTTTTCTCTCCACCTCCTCCCTGTTTTTCGATCCTTCGATGAACAGAGAGCAAAAATACTGCCATTTACATCTGAAAATTCAGCTCGCTATCCAGACGATTATTCAATTTTTGACGAATCTGTTGTCTTACCCCCGACGAAATTGTTGTCGCGGATGAGCGACGATCAAGCCTCTAAGCTGAGGGAACTGGAGAGAGACTACGAAGAGGCAATTGATGACAACTGCAGGATTGTTGCTGATTACTTCAAAGAAGTTTTGGTGAATAATACTGGCGACTCATCAATTAGTCCACCATTGTCGGTTCTGAAGAACAGCAGAGATGATGCAGAAATGGAGCATAGCCAGGAGGAGATAGTAGAAACAAATGCTCCTTTGTTTACGAACGGACGGTATAATCCAATTTGGACCGAAAGGGAAACGTCTATTGAATTTTCGAGTAGCAGTTTCAACGCCGAGTGCTTGAATGCACCGTTTTACCCTCAAAGAGTCTCTCCCAAAATCCTCAAACACCAAGAAACTTCTATAAAACTGTCCTTACCATCTCGTTCAGACATAGATGCTGAAACTGAGTCTTCCGAGAATGAAAATATGCCTTGTTATTCGTCAGAATCTGAGGCAGAAACTAAGGAAAAAGACATGATGGTACCACTGGAGCCTCGAGGAAGCCAAATCCTAGAATCTTTTCAGATTAATATTGCAGAACCCGGAGGTTCCCCAGATTATACCATGGCAGATTATGATCACCAGCCGCCTGGAAATGGAAAATGTGCGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCTATCGAAGAATGGTTCAACAGAGGGAACTCAACCTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAACTGCCTAAAACAAATTACGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCTAATTCAATACCATCTCCATCTCCATCTGAGAGTCTACATGCTGAAACTGAGGTAGCAATTAAGTCAACGACGCCTTCAACTTCTCCTAATAGTGTTATAACACAAGCCAATGTTGATGGGATGATTAGTGAGTTAAGACATGCAATTAACAACCTGTACATGTCAGAGATGCTCGAGGAGTCTGAAATGGCTGTGCTTCAAATTGAGCAATTTTGGAAAGAAGTAAACCTGGGAGTGGATATCCAGAGCATGTTATCAAAACCTCCAATCATTAATGGGTTCATGGAGATTCTATTTAATTCTATTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGGCCGAGATGGGTTCTAGGGACAATGCTGTTATTCAGACGCTTACCCGAGTGGACTCGGATGTCGAATGTATTATGGCGCTTTTCAAGAAAGGCTTGACAGAGGCTGTTGTATTAATATATCTCCTGAAGCCTTCTACTACGACTCTTGCAGAAATGGCCATATTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGTTTAAGATGTGCATAAAGCCCAAGTCAGCTGCGGTACTTTTACTGGCACAGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCCGTAGCCAAGACTTTGCTGAGTGGTAGAGTAATTGGATATATAGTTGGCAGTTTTCGAGCTGAGTGGGCTGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCTGTCTCCCATTTTGGAGAGCTTCATTGGGGCAAAAGATGCAGAACGTTTTAAGACAATTCAATTGTTTTCGGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTAGCTTATATGCAGACAGCCCTTCAAGATCAATCTCCAGTTGTGGCTGGCCTCTTGCTCCAACTTGATCTTCTGGTAGAACCAAGAAAAATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCAGAAACAATGATTTTCCGGCTACACAAGTAGTAGCTGCTGAGACAATAGTGTCATTACAAGGAAGGTTCAACTTCGCTGGAAAGCCTCTCATTAGAGAAGTCCTTCTCAACCGTGCTGGCTTTAACAGAAATCGTAGAAGTCTTGATCAGATGGATCATATCAGCAATATCAGTGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAGTTGCGTCTGTTTTAGTTGGCCATGAGTTTGGTCTACTTTTTGAGGCTTTAGCTGAAGGCGTGAAAAGCCGAAGTACACAACTAAGTTCAACATGCTTTATATCAGCCACATGGCTTACATACATGCTTAGCGTTCTACCAGATACAGGAATACGAGGAGCAGCCTGTGTCTGCATGCTCAAGCGCTTTGTATGTATTTTAAAATCTGCTAAGGACACTGAAGATAGAATCCTTGCTGTGCTTGCTTTAAATAGCTTTCTTCAGTACCCTGATGGATTGCAGGATCTTACTTCCTACACCAAGGATGTCCTAAAAGGTCTGAGAGAGCTAAAGAGATACTCCCCTCTGGCATCTGAATTGCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAGCTGGCATCTGGATGCATAAAGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTCTAATAAGGATAAAATTTTCTCAGGCCATTCAGATGGAACTGTCAAGGTCTGGATAGTAAGGGGGAGCTCATTCCATCTGATACAAGAGACGCAAGAACACATGAAGGCGGTTTCATGTTTAGCAGTATCAGAATCTGGTGACAAACTATACAGTGGTTCACTTGATCGATTAGTAAAGATCTGGTCTATAGGAAAGTCAGCAATACAGTGTGTACAGGTGCATGATATGAAAGTCCAGATTCATAATTTAGCTGTAGCCAATAGCAAATTCTGCTACATTCCTCAGGGAAACGGTGTTAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGGTCATTGGCTCTTGTTCATGAGAGGCTATACTGTGGATGCCATGACAACAGTATTCAGGAGATAGATTTTGAAACAGGAACAGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTCTATGCCCTGCAAATTCGTGGTGAGCATATATATGCAGCCAGTTCTTCCTTGGATGGAGCCGTTATAAAGATATGGAACACTTCCAATTACAGTATGATTGGATCACTGGTAGTTGCATCAGAAGTGAGGACGATGGCAATAAGCTCAGAATTAATTTACTTGGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACAGAACAGAATTGATACATTACAGATTGGTACAAATGGTAGGATTGCTTGCATGGCTGTCGATGGAAATGAAGAAATTTTTGTCATTGGAACCTCTGATGGCCGAATTCAGGCATGGGGAATAAACTAA 4005 0.428 MTTTTTTSSQILQRTTDFLSDVLSHSELRRRLISTLLLHSSISNQITLKHLNLAADTLDNAISVSSPTIRTSSFTLAEKLLLPLPQNPISSFLLSLIYTINKRQVEAALSLFQLFYLSPSLARSEIAPIIYEQLFSLHLLPVFRSFDEQRAKILPFTSENSARYPDDYSIFDESVVLPPTKLLSRMSDDQASKLRELERDYEEAIDDNCRIVADYFKEVLVNNTGDSSISPPLSVLKNSRDDAEMEHSQEEIVETNAPLFTNGRYNPIWTERETSIEFSSSSFNAECLNAPFYPQRVSPKILKHQETSIKLSLPSRSDIDAETESSENENMPCYSSESEAETKEKDMMVPLEPRGSQILESFQINIAEPGGSPDYTMADYDHQPPGNGKCAPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSESLHAETEVAIKSTTPSTSPNSVITQANVDGMISELRHAINNLYMSEMLEESEMAVLQIEQFWKEVNLGVDIQSMLSKPPIINGFMEILFNSIDPQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSTTTLAEMAILESLITVFDKKEEDLFKMCIKPKSAAVLLLAQILGSNEERIASSVAKTLLSGRVIGYIVGSFRAEWAEERIAAVEILLRCIQEDGTCRHLIAEKVELSPILESFIGAKDAERFKTIQLFSELVKLNRRTFNEQILHIIKEEGAFSTMHTFLAYMQTALQDQSPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAAETIVSLQGRFNFAGKPLIREVLLNRAGFNRNRRSLDQMDHISNISGELEMNPEEEKAADDWERKVASVLVGHEFGLLFEALAEGVKSRSTQLSSTCFISATWLTYMLSVLPDTGIRGAACVCMLKRFVCILKSAKDTEDRILAVLALNSFLQYPDGLQDLTSYTKDVLKGLRELKRYSPLASELLKVLVEENESKAGIWMHKELIQVDCSENGEVLSVISNKDKIFSGHSDGTVKVWIVRGSSFHLIQETQEHMKAVSCLAVSESGDKLYSGSLDRLVKIWSIGKSAIQCVQVHDMKVQIHNLAVANSKFCYIPQGNGVKVQSLNGESRLLNSNKYVRSLALVHERLYCGCHDNSIQEIDFETGTVNTIQSGSKRLLGKANPVYALQIRGEHIYAASSSLDGAVIKIWNTSNYSMIGSLVVASEVRTMAISSELIYLGCKGGAVEIWDRKKQNRIDTLQIGTNGRIACMAVDGNEEIFVIGTSDGRIQAWGIN 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2162 1334 SMART WD40_4 1253 1289 IPR001680 GO:0005515
Alju01g2162 1334 SMART WD40_4 1292 1332 IPR001680 GO:0005515
Alju01g2162 1334 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Alju01g2162 1334 SMART WD40_4 1214 1250 IPR001680 GO:0005515
Alju01g2162 1334 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Alju01g2162 1334 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Alju01g2162 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1300 1334 - -
Alju01g2162 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
Alju01g2162 1334 SUPERFAMILY ARM repeat 508 1033 IPR016024 -
Alju01g2162 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Alju01g2162 1334 SUPERFAMILY RING/U-box 390 469 - -
Alju01g2162 1334 Pfam WD domain, G-beta repeat 1090 1123 IPR001680 GO:0005515
Alju01g2162 1334 Coils Coil 187 207 - -
Alju01g2162 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1300 1334 IPR001680 GO:0005515
Alju01g2162 1334 Pfam U-box domain 393 463 IPR003613 GO:0004842|GO:0016567
Alju01g2162 1334 SUPERFAMILY WD40 repeat-like 1059 1333 IPR036322 GO:0005515
Alju01g2162 1334 SMART Ubox_2 395 459 IPR003613 GO:0004842|GO:0016567
Alju01g2162 1334 MobiDBLite consensus disorder prediction 314 343 - -
Alju01g2162 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1333 - -
Alju01g2162 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 469 IPR013083 -
Alju01g2162 1334 Gene3D - 1174 1334 IPR015943 GO:0005515
Alju01g2162 1334 Gene3D - 1038 1173 IPR015943 GO:0005515
Alju01g2162 1334 CDD RING-Ubox_PUB 393 445 IPR045210 -
Alju01g2162 1334 Gene3D - 519 852 IPR011989 -
Alju01g2162 1334 ProSiteProfiles U-box domain profile. 391 466 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2162 Alju-ChrAlju01 18591511 18598368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2162 392 472 U-box Gene Family AT1G67530 51.852 2.33e-18 89.4