Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2159 ATGTCTGTGCCAGAGGAGCAGGACTATGTAGGCTTGACAGAGCTTCCTTCAATGGAAAAAGGCTCAGACAAGTTTTCTCAGAGAAGCAACAGTACTACTGGCTTGAACCTCAAGGCCACTGAGCTACGACTTGGACTGCCTGGGTCCGAGTCACCGGAGAGGGACGTCGCCGGGAAGAGTGCGGTAGTCTGTGGGGCCAAGAGAGGCTTCTCAGACACCATTAATGGCGGTTCTGCAAAGTGGGCTGTGTCAGGAAATGGAGGATCTGAGACAAGTTTGGGTAAAGATAGCATCCCAAACTCACCAAAGCCGTTGTTGCATGAGAAGAAGCAGCCCCAGATATCTGCTGTTCCTCCCAAGGAACCAGTTGTGGGGTGGCCACCAATCAGATCTTTCAGGAAGAACTCGATGGCTTCTAATCCTCAAAAGAACGGTGATGATGAAGCAGAAGCCAAGTGTGGATGTCTTTATGTGAAAGTAAGCATGGATGGTGCCCCCTACTTGAGGAAAGTGGATCTCAAAAACTTTGCTAGTTACCGCCAACTTTCTTCAGCACTTGAAAAGATGTTCAGATGTTTTACTATCAGTCAGTGTGGGTCTCAGGGAATTTCAAGTCATGATAACTTGAGTGAAAGCAGGCTGAAGGATCTGCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTGCCCTGGGAGATGTTCACTGCCTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAGGCAATTGGCCTAGCACCAAGAGCAATGGAGAAGTGCAAAAGCAGAAACTAG 828 0.4783 MSVPEEQDYVGLTELPSMEKGSDKFSQRSNSTTGLNLKATELRLGLPGSESPERDVAGKSAVVCGAKRGFSDTINGGSAKWAVSGNGGSETSLGKDSIPNSPKPLLHEKKQPQISAVPPKEPVVGWPPIRSFRKNSMASNPQKNGDDEAEAKCGCLYVKVSMDGAPYLRKVDLKNFASYRQLSSALEKMFRCFTISQCGSQGISSHDNLSESRLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTASCKRLRIMKSSEAIGLAPRAMEKCKSRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2159 275 MobiDBLite consensus disorder prediction 77 98 - -
Alju01g2159 275 Gene3D - 149 269 - -
Alju01g2159 275 SUPERFAMILY CAD & PB1 domains 155 256 - -
Alju01g2159 275 FunFam Auxin-responsive protein 150 267 - -
Alju01g2159 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 262 IPR003311 GO:0005634|GO:0006355
Alju01g2159 275 MobiDBLite consensus disorder prediction 20 38 - -
Alju01g2159 275 Pfam AUX/IAA family 40 266 IPR033389 -
Alju01g2159 275 ProSiteProfiles PB1 domain profile. 155 257 IPR000270 GO:0005515
Alju01g2159 275 MobiDBLite consensus disorder prediction 75 103 - -
Alju01g2159 275 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2159 Alju-ChrAlju01 18530673 18532620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2159 131 273 B3 DNA Binding Superfamily AT1G19850 29.371 2.50e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju01g2159 AUX_IAA 1.2e-84 CL0072