Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2150 ATGAGCCAACTAGGTCATCTTCTTCATATTTCTCTTCTCTTTCTACTTTCCTTCCATGTCACAGCACAACAACAGATGAATGAAAGTTCAACTTCAGTCGATGGCGGCATCGGCAATTTCCAACCAAGTTTAGCAGTTGTCATAGGAGTCTTATCTCTCATGTTTTCACTCACATTCATTCTTCTCTTATATGCCAAGTTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCTGACAATCCACCTGTACTTATGAGATCAAGATCCAGATTCTCTGGAATCGACAAGACTGTCATAGAATCTCTCCCTTTCTTCAGATTCTCTTCCCTCAAAGGCTCAAAAGAAGGCCTTGAATGTGCAGTGTGCTTGTCAAAGTTTGAAGATATTGAAATCCTCAGGCTTCTTCCCAAATGCAAACATGCCTTCCACATCGATTGTATCGATCATTGGCTCGAGAGACACTCTAGTTGTCCTCTTTGTAGAAGAAAGGTCAGTTCTGATGACCCCACCATGCTTACTTATTCAAACAGTTTGAGACTTCTAACTATGAACCAGTCAGAGAATGGTGAGGAACCCAATATAGAGATCTTTGTTCAGAGGGAAGAAGATCAAAGTCATGGTGGTTCTTCTTCTTCAAGATTCAGAATTGGAAGCAGCTTTAGGAAATCTGGGAAGGGTATTATTATTAAAGAAGAAGAATTGCCAATCAAAGAAGAAAAAGAAACAGAGCATGATGATAGTGGTGGAAAGTTGTATCACAAACAAAACCACAAGATTAATATAAGTGATGTGGTGTTCAAGCACAGATGGAGCAACGTGAGTTCTTCAGACTTGATGTTTTTGAATTCAGAGATAATTAGTTCTATGCAGAGAAAAAGATTCAATCTTTCAGAACCAAATGGTGATGAGAAGATTCGAGCTTCAACATCAGCAGAAAATGGGCAAATTTTCAACATAAAGGAGGAGATGGAGAGGAAGATATCATTTGAGACAAAGGTCGGTGCATTAAACTCTGTTTTAGATACATCAGATTGTGTTGGAACCTCATCTTCTAGTGGTCATACATCAAAATATGTGAATCCGGGGGACAAAAGATCGATGTCGGAAATTACTGGTGTGTCTAGATTTAGAGATTTGGGTATGAGAGACAGAGTATTGAGGGATTCTTCAGTGATTGCAAGTGATGTTAAAGAAGAAAGAAGGAGGCAGCTATGGCTACCAATCGCCAGAAGAACTGTTCAATGGTTTGTGAATAGAGAAAAATCTCAGCCATTAAATGTATAG 1284 0.3949 MSQLGHLLHISLLFLLSFHVTAQQQMNESSTSVDGGIGNFQPSLAVVIGVLSLMFSLTFILLLYAKFCQRRASAHVDPDNPPVLMRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVSSDDPTMLTYSNSLRLLTMNQSENGEEPNIEIFVQREEDQSHGGSSSSRFRIGSSFRKSGKGIIIKEEELPIKEEKETEHDDSGGKLYHKQNHKINISDVVFKHRWSNVSSSDLMFLNSEIISSMQRKRFNLSEPNGDEKIRASTSAENGQIFNIKEEMERKISFETKVGALNSVLDTSDCVGTSSSSGHTSKYVNPGDKRSMSEITGVSRFRDLGMRDRVLRDSSVIASDVKEERRRQLWLPIARRTVQWFVNREKSQPLNV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2150 427 Pfam Ring finger domain 118 161 IPR001841 -
Alju01g2150 427 SUPERFAMILY RING/U-box 98 167 - -
Alju01g2150 427 CDD RING-H2_EL5-like 118 161 - -
Alju01g2150 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 169 IPR013083 -
Alju01g2150 427 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Alju01g2150 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 421 - -
Alju01g2150 427 SMART ring_2 119 160 IPR001841 -
Alju01g2150 427 FunFam RING-H2 finger protein ATL43 94 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2150 Alju-ChrAlju01 18391934 18393217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2150 7 427 C3H Transcription Factor Family AT4G28890 45.169 3.66e-104 314