Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2143 ATGGCGGAGCTACCCAGCTCAGAGATAGAGACAAGCATTCACACTAACTGGTCCTCGCACTCTCCATCGTCGTCGTCGTCGTCGACATCTGGGTTATCTCAGTGTTTACCAGCAAACTCTGCTTCTGAGCCATTACCTGCGGAACAGGGGAAGCTGAAGCGAGGCAGAGATAGCAGCAGCAAGCACCCTGTGTACAGAGGGGTTCGAATGCGAGCGTGGGGAAAGTGGGTATCCGAAATCCGGGAGCCCAGGAAGAAGAATCGGATCTGGCTTGGCACGTTCGCCACGCCGGAGATGGCGGCGCGTGCCCACGACGTGGCCGCGCTGGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCAGGTTCTCTGCCCCGACCCGCCTCCAACACGCCCAGAGATGTCCAGGCCGCCGCATCAAAGGCCGCCGCCATGGAAGTATTCAGCCCTCCCACGGCGTCGTCGCTATCATCTTCCTCCTCATCATCTTCATTGACAATGTTCACCTCCTCCGGCGAGCCATCCACTCCGGAGGAACTCGGCGAGATAGTGGAGCTACCGCCGTTAGGAAGCAGCTTCGAATCAGCCGACCCGGGGAACGAATTGGTGTTTTTTGACCCGGTGGACGGATGGCTGTACCCTCACCCGTGGTATCACAGCATTTATGATGAAAAGGATTGTGGTGGGTATTTCCTGGGGGATGACACATTATCAATGCAAGAAGAAGAGAGTGTGGCTCTGTGTGGATTCGAGGGCTCCTTGTGGCAATATTAA 783 0.5658 MAELPSSEIETSIHTNWSSHSPSSSSSSTSGLSQCLPANSASEPLPAEQGKLKRGRDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPELAGSLPRPASNTPRDVQAAASKAAAMEVFSPPTASSLSSSSSSSSLTMFTSSGEPSTPEELGEIVELPPLGSSFESADPGNELVFFDPVDGWLYPHPWYHSIYDEKDCGGYFLGDDTLSMQEEESVALCGFEGSLWQY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2143 260 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Alju01g2143 260 MobiDBLite consensus disorder prediction 49 63 - -
Alju01g2143 260 MobiDBLite consensus disorder prediction 8 40 - -
Alju01g2143 260 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Alju01g2143 260 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Alju01g2143 260 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Alju01g2143 260 MobiDBLite consensus disorder prediction 1 63 - -
Alju01g2143 260 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Alju01g2143 260 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Alju01g2143 260 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 195 - -
Alju01g2143 260 MobiDBLite consensus disorder prediction 154 179 - -
Alju01g2143 260 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Alju01g2143 260 MobiDBLite consensus disorder prediction 154 182 - -
Alju01g2143 260 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Alju01g2143 260 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2143 Alju-ChrAlju01 18328585 18329367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2143 32 231 AP2-EREBP Transcription Factor Family AT5G11590 60.000 2.37e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g2143 AP2 5e-14 CL0081