Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2127 ATGCAGCCTGCGTTCTCGCAGCTGGGCTTCACGCCGCTGTCTTTCTGGGTCAACATGCGTGCCAACATGTTTGTTTCAGCCATGGATAACATATTGGTTTCAGAAGGCAATAATAATAACCTGGGCGCCACGCCCTCCCTGCACCCACCTCCCAACAACTCCATCGATCTGGGGGCTTTCGACCTCGATGAGGCCCTTGCCTCCGCCGGCCATGCATGCCGCCTATTCGCTCAGTCTCAGAGCTTGGTGGCCACGTTGCCGGCGGTTCAACACACGGACGCCGCCGATGCTGTTTGCTCGGTTTGCATGGAAGGCTTTGATTCTGAAGGAAACAAACAAATACCCTGCGGTCACGTGTACCACTCCGGCTGCATCACCTCCTGGATCTCTCGCTCCAACTCTTGCCCACTTTGCCGCTCTCATATCTTCCTCCACATTCCTTAA 444 0.5563 MQPAFSQLGFTPLSFWVNMRANMFVSAMDNILVSEGNNNNLGATPSLHPPPNNSIDLGAFDLDEALASAGHACRLFAQSQSLVATLPAVQHTDAADAVCSVCMEGFDSEGNKQIPCGHVYHSGCITSWISRSNSCPLCRSHIFLHIP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2127 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 140 - -
Alju01g2127 147 Pfam Ring finger domain 99 139 IPR001841 -
Alju01g2127 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 143 IPR013083 -
Alju01g2127 147 ProSiteProfiles Zinc finger RING-type profile. 99 139 IPR001841 -
Alju01g2127 147 SUPERFAMILY RING/U-box 93 145 - -
Alju01g2127 147 SMART ring_2 99 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2127 Alju-ChrAlju01 18183783 18185798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2127 79 146 C3H Transcription Factor Family AT1G68180 38.889 9.17e-12 58.9