LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g2108	ATGAAGACCAAGACGCCATTAAAGCAACTCAAGCTCGCTGTTCCTGCTCAAGAAACCCCCATCTCCTGCTTCCTGACTGCAAGTGGCACATTTCATGACGGAGATCTGCTCTTAAACCAGAAAGGATTGCGCCTCATCTCAGAAGAAAGAGAATCGCGGCCTTCTTCTGATGGTAAGGAACTTGATTTTGACTTCACACTGGAAGACCTTGAGACCATCAAAGTGATTGGAAAGGGCAGTGGTGGTGTAGTACAACTTGTTCGCCATAAGTGGGTCGGAAAATTATTTGCCTTGAAGGTTATTCAGATGAACATACAAGAGGAGATTCGAAAACAGATTGTCCAGGAGCTGAAAATTAACCAAGCATCACAGTGTCCACATGTAGTAGTTTGTTACCACTCGTTCTACCATAATGGAGCGATATCTCTTGTGTTAGAATACATGGATCGTGGTTCTCTATTGGATGTAATCAGACAAGTTAAAACAATTTTGGAACCATATCTTGCAGTTGTTTGTAAGCAGGTCTTGCAAGGCCTTGTTTACTTGCATCATGAGAGACATGTTATTCATAGGGACATCAAACCGTCCAATCTGTTAGTAAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTACAACTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGCGACATCTGGAGTTTGGGCATGGTGGTACTTGAGTGTGCCATAGGGCGTTTTCCTTATATACAATCTGAAGATGAGCAAAGCGGGCCTAGCTTTTATGAGCTTTTGGAAGCAATCGTGGAAAGGCCTCCACCTTCTGCTCCGTCAGATCAGTTCTCTCCAGAGTTCTGTTCATTTGTGTCATCCTGCATACACAAGGATCCACGGGATCGATTGACATCCTTGGAGCTTCTGAGTCATCCTTTCATAAAGAAGTTTGAAGACAAGGATTTAGATCTTGGGATTCTGGTAGGCAGCTTGGAACCTCCTGTAAATTTTTCTAGATAG	1068	0.4316	MKTKTPLKQLKLAVPAQETPISCFLTASGTFHDGDLLLNQKGLRLISEERESRPSSDGKELDFDFTLEDLETIKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEEIRKQIVQELKINQASQCPHVVVCYHSFYHNGAISLVLEYMDRGSLLDVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDEQSGPSFYELLEAIVERPPPSAPSDQFSPEFCSFVSSCIHKDPRDRLTSLELLSHPFIKKFEDKDLDLGILVGSLEPPVNFSR	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g2108	355	Gene3D	Transferase(Phosphotransferase) domain 1	151	344	-	-
	Alju01g2108	355	SUPERFAMILY	Protein kinase-like (PK-like)	67	342	IPR011009	-
	Alju01g2108	355	Pfam	Protein kinase domain	71	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g2108	355	CDD	PKc_MAPKK_plant_like	68	334	-	-
	Alju01g2108	355	SMART	serkin_6	70	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g2108	355	FunFam	Mitogen-activated protein kinase kinase 6	39	149	-	-
	Alju01g2108	355	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Alju01g2108	355	ProSiteProfiles	Protein kinase domain profile.	70	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g2108	355	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Alju01g2108	355	FunFam	Mitogen-activated protein kinase kinase 6	151	349	-	-
	Alju01g2108	355	Gene3D	Phosphorylase Kinase; domain 1	39	149	-	-
	Alju01g2108	355	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	25	332	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g2108	Alju-ChrAlju01	17930594	17934335	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g2108	1	355	MAP Kinase Kinase Gene Family	AT5G56580	86.517	0.0	637

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Alju01g2108		Pkinase	1.1e-66	CL0016