Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2092 ATGATGCTCGGAGAACCCCATCACGCTAATCCGACGGTTCACATACCGCCGTGGCCTGTCATCGATGATCCGATGCCGGAGGTGTACTCTCCTTACTCGATGAGTGGCATGACTGCTAACTCCGACGGCAATGCCAGTGGCGGCGACTACTCTCCGTACTACTTGCAAGAAGCACTGACGGCACTCCAGCGTTATCTGCCGTCGAACGACGCCGATATCGACTCTGATTCCGAGGTTCTTGGTCGAGAGTTGGATGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCGCGTGGCCGATCACATGACTGGACTGAGTGTCCTTATGCCCATCCCGGCGAGAAGGCTCGACGTAGGGACCCGAGGAAGTATCACTACTCGGGTACTGCATGCCCTGATTTCCGCAAAGGGAATTGCAAGAAGGGAGATGCATGCGAATTTGCTCATGGCGTGTTTGAGTGTTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCACCGGCTGTCGCCGAAGGGTCTGTTTCTTTGCTCACACGCCGGAGCAACTTAGGGTCCTTCCTCAGCAGAGTCCGAGGAGCGCTAACTCGGTGGACTCCTATGATGGGTCTCCTCTCAGGCAAGCGATTGATTCTTCTTGCGCAAAATCGCTTCCATTCATGTCGTCTCCTGGTTCTATATCCCCTCCTGCAACTCCTCCGGCAGAATCTCCTCCTATGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTAGGTTCGAGCTCCATTAATGAGATGGTGGCTTCTCTGCGTAATTTACAGCTGGGGAAGGTAAAGTCTCTACCCCCTTCTAGAAATGTTCCAATGGGATCTCCCCGTTTTGGATCTCCACGTGGATCGGTGCTCCGTCCAGATTTCTATAGCCTCCCGTCAACTCCTACTGAGGCACCGACTCGTTCTGGTGCCTGTTATTTCGATCTCTGGGATCAGAGTTGTGAGGAGGAGCCGGCCATGGAGAGGGTGGAATCTGGAAGGGACATAAGGGCGAAGATGTTTGAAAAACTTAGCAAAGAGAACTCTCTGGATCGATCGGGTCCCAGCACATCCGCCGGAGCTCCAGATGTTGGTTGGGTTTCAGAGCTGGTTAAGTGA 1167 0.5441 MMLGEPHHANPTVHIPPWPVIDDPMPEVYSPYSMSGMTANSDGNASGGDYSPYYLQEALTALQRYLPSNDADIDSDSEVLGRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTGCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIDSSCAKSLPFMSSPGSISPPATPPAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSLPPSRNVPMGSPRFGSPRGSVLRPDFYSLPSTPTEAPTRSGACYFDLWDQSCEEEPAMERVESGRDIRAKMFEKLSKENSLDRSGPSTSAGAPDVGWVSELVK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2092 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Alju01g2092 388 MobiDBLite consensus disorder prediction 238 252 - -
Alju01g2092 388 MobiDBLite consensus disorder prediction 284 304 - -
Alju01g2092 388 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Alju01g2092 388 PANTHER UNKEMPT FAMILY MEMBER 51 388 IPR045234 -
Alju01g2092 388 MobiDBLite consensus disorder prediction 233 264 - -
Alju01g2092 388 Gene3D - 135 199 - -
Alju01g2092 388 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Alju01g2092 388 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Alju01g2092 388 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Alju01g2092 388 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2092 Alju-ChrAlju01 17730937 17732103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2092 85 293 C2H2 Transcription Factor Family AT5G12850 49.537 9.81e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2092 zf-CCCH 3.9e-06 CL0537