Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2066 ATGGACATAACCTCCGCCGTAATCAACAACATCGCCGCCTCTAATACTACCGGCGCCAAATCTCCGGAACCTGACAGTGAAATTCCGACCCGGATCCAACCCGCCCCCGCCAAGCCCTTGTCCTTCTCCAACGGCGTCCTGAAGCGCCATCAGCCCCACCACAAACATCCCGTGCCGTTTACCTACAAAGAATGCTTGAAGAACCATGCAGCCAGCTTGGGAGGCCACGCGCTCGACGGTTGCGGCGAGTTCATGCCTTCTCCCAACGCCAATTCCGCCGACCCAAGTTCCATCAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCATCGCCGTGAGCCCGAGGAGCCTATTTCCTCCGCGACCCACGTCATCGAGTATCAACCCCACCATCGGCACCACCCTCCGCCGCCTCCGCCGTTCCAAGTTCCAAATCGGAGCCCCAATTCAGCTTCCCCACCCCCGATCTCATCTTCCTACTACCCCTCCGCGCCCCACATGCTCCTGGCTCTCTCTGCCGGTTTGTCGGTCCATCCCGAGAGCACGGCTGCTCCGGTGAATGCTTTGGGGACGCCGACTATGAATTCTAGGAAGCGGTTCAGGACTAAGTTCACACAAGAGCAGAAGGATAAAATGTACCAGTTCGCTGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTGCAGGAGTTCTGTCACGAGGTTGGGATTGATAGAGGTGTTTTGAAGGTTTGGATGCACAATAATAAGAACACTCTTGGGAAGAAAGATGCGATGAATGGGAATAGAAACGTTCTTGAGCTAGACCCAAACAACAATCACGGCAATGAAATCACCGGCAACAACAACAACAACGGCAGCGCCCAGGATCCGAATCATCACTACCAGAACGATAGTGAGGCGAACGCCGGTACTAATGGGTCGTCTTCATCTTCTTAA 948 0.5464 MDITSAVINNIAASNTTGAKSPEPDSEIPTRIQPAPAKPLSFSNGVLKRHQPHHKHPVPFTYKECLKNHAASLGGHALDGCGEFMPSPNANSADPSSIKCAACGCHRNFHRREPEEPISSATHVIEYQPHHRHHPPPPPPFQVPNRSPNSASPPPISSSYYPSAPHMLLALSAGLSVHPESTAAPVNALGTPTMNSRKRFRTKFTQEQKDKMYQFAERVGWKMQKRDDDLVQEFCHEVGIDRGVLKVWMHNNKNTLGKKDAMNGNRNVLELDPNNNHGNEITGNNNNNGSAQDPNHHYQNDSEANAGTNGSSSSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2066 315 MobiDBLite consensus disorder prediction 128 158 - -
Alju01g2066 315 MobiDBLite consensus disorder prediction 268 315 - -
Alju01g2066 315 MobiDBLite consensus disorder prediction 14 38 - -
Alju01g2066 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 256 - -
Alju01g2066 315 MobiDBLite consensus disorder prediction 134 151 - -
Alju01g2066 315 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Alju01g2066 315 MobiDBLite consensus disorder prediction 258 315 - -
Alju01g2066 315 SUPERFAMILY Homeodomain-like 191 258 IPR009057 -
Alju01g2066 315 Gene3D - 189 258 - -
Alju01g2066 315 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 113 IPR006456 -
Alju01g2066 315 FunFam Zinc-finger homeodomain protein 2 186 258 - -
Alju01g2066 315 Pfam ZF-HD protein dimerisation region 61 114 IPR006456 -
Alju01g2066 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2066 Alju-ChrAlju01 17490677 17491624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2066 20 292 ZF-HD Transcription Factor Family AT3G28920 52.069 2.28e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju01g2066 ZF-HD_dimer 2.6e-28 No_clan