Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2053 ATGTCTAGCAGAAGGTCAAGGCAACAATCGTCGTCGGGTTCTTCATCCATCTCCGATGACCAAATCATCCAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTGATACTCGCCGCTCCAACAAGGCATCTGCATCAAAGGTCCTACAAGAGACGTGCAATTACATCAGAAGCTTAAACAGAGAAGTGGACGACTTGAGCCAACGACTCTCTCAGTTGTTGGCCACAATCGATGCTGATAGTGCCGAGGCCGCCATCATTAGGAGCCTCATTAATCCTTAA 288 0.4757 MSSRRSRQQSSSGSSSISDDQIIQLVSKLRQLVPEIRDTRRSNKASASKVLQETCNYIRSLNREVDDLSQRLSQLLATIDADSAEAAIIRSLINP 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2053 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Alju01g2053 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Alju01g2053 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Alju01g2053 95 Coils Coil 51 78 - -
Alju01g2053 95 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Alju01g2053 95 FunFam Transcription factor ILI6 5 90 - -
Alju01g2053 95 Gene3D - 18 90 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2053 Alju-ChrAlju01 17308860 17310012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2053 17 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.325 2.93e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g2053 HLH 7.7e-05 No_clan