Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2035 ATGGCTGAAGGTTTTAATAAGGCCGCCACCCTTTTCTTCTTCTTGGCCATTTTCTCCATTTCTATCCCATGCTTCCAAGCCAACGTGGCCGAGTACGACGACTACATCATTAAACGATCCGAGGAATCCCGTAGAGCCACCCTTGAAGCCTACGAGCCTGACCCCTATAATGTCACCTCCGAATTCAATCTCCACGTTCACTTAGCTTTGAAGGAGAGCAACAGGAGGGGACTAGGTGGGAGGAAATACAAAGGACCATGCATGGCCACCAACCCTATTGACAGGTGCTGGCGGTGCAGGCCTGATTGGGCCAATGATCGCATGAGGTTGGCTAGATGTGTGAAGGGTTTTGGCCGGAAGACCACCGGAGGACTAGGCGGCCGGATATATGTGGTCACCGACCCCTCTGACAACGACTTGCAGAACCCCAAGCCTGGAACTCTGAGGCATGGGGTGGTCCAGGACGAGCCATTATGGATCATTTTCGAACGCGACATGAACATCGTACTTCAACAAGAACTTCTGGTTAACTCGCACAAGACCATCGACGGCCGTGGCGCCAACGTCCAGATCACCAAAGGTGCTAGCATTTCCTTGTTCATGGTCACCAACGTTATCATCCACAACATTCGCATCCACAACGTTGTGGCCAAGCCAGGTGGTATGATTAGGGACTCCTCTCACCATGTTGGTTTGAGAACTAGGAGCGACGGAGACGCCATCTCCATCTTTGGCGCCTCCAACATCTGGATCGATCATGTTTCAATGTCTAGAGCCGCTGATGGGCTCGTTGACGCCATCCAAGGGTCCACTGCCATCACCATCTCCAACTGCCACATGACCGATCACAATGACGTGATGCTGCTGGGAGCAAGCGACGTATACACAGGGGACAAGATAATGCAGGTGACGGTGGCGTTCAACCATTTCGGGCAGGGACTGATACAGAGGATGCCAAGGGCAAGATGGGGATTTGTGCATGTAGTGAACAACGACTATACTCACTGGCTCATGTACGCCATAGGTGGAAGCTCGGCGCCGACAATACTGAGTCAAGGAAACCGATTCATTGCTCCAAACGAGCGGGCGGCTAAGGAGATAACGCACAGGGAGTACGCGACGCCGCAGGAATGGAGCAGGTGGAAGTGGACGTCGGAGATGGACTTGTTCATGAACGGAGCGACGTTTCTTGAGTCGGGAGGGCGCGTAATGGCCAAGTCATACGCGAGAGAATCAATGATCAAACCCAGAGATGGATCCTTTGTGACCAGGTTGACCAGGTTTAGTGGTGCTCTTGGTTGCCGAGTGGGAAAACCTTGTTAG 1323 0.5276 MAEGFNKAATLFFFLAIFSISIPCFQANVAEYDDYIIKRSEESRRATLEAYEPDPYNVTSEFNLHVHLALKESNRRGLGGRKYKGPCMATNPIDRCWRCRPDWANDRMRLARCVKGFGRKTTGGLGGRIYVVTDPSDNDLQNPKPGTLRHGVVQDEPLWIIFERDMNIVLQQELLVNSHKTIDGRGANVQITKGASISLFMVTNVIIHNIRIHNVVAKPGGMIRDSSHHVGLRTRSDGDAISIFGASNIWIDHVSMSRAADGLVDAIQGSTAITISNCHMTDHNDVMLLGASDVYTGDKIMQVTVAFNHFGQGLIQRMPRARWGFVHVVNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNERAAKEITHREYATPQEWSRWKWTSEMDLFMNGATFLESGGRVMAKSYARESMIKPRDGSFVTRLTRFSGALGCRVGKPC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2035 440 Pfam Pectate lyase 173 356 IPR002022 -
Alju01g2035 440 PANTHER PECTATE LYASE 18-RELATED 44 438 IPR045032 GO:0030570
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Alju01g2035 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Alju01g2035 440 Gene3D - 90 433 IPR012334 -
Alju01g2035 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
Alju01g2035 440 SMART amb_all 165 362 IPR002022 -
Alju01g2035 440 Pfam Pectate lyase, N terminus 28 78 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2035 Alju-ChrAlju01 17126507 17128227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2035 12 440 Polysaccharide Lyase AT5G15110 53.879 0.0 526