Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2017 ATGGGAAGGCCACCTTGCTGTGATAAATCCAACGTGAAAAGGGGCCTTTGGACTCCTGAGGAGGATGCTAAACTACTCGCTTATGTTTCCAATCATGGCACTGGAAATTGGACTCTGGTTCCTAAGAAAGCTGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTTAGATGGACTAACTATCTTAGACCTGACCTCAAGCACCATAGCTTCACCCCCCAAGAAGAAGAGCTTATTATTAACCTTCATCGAGCCATAGGAAGCAGGTGGTCTTTGATTGCAAGGAGACTACCAGGGAGAACAGATAATGATGTGAAGAACCATTGGAACACAAAGCTGAGGAAGAAGCTTATGAAGATGGGAATTGACCCTATTACCCATAAACCAGTGTCTCAAGTCCTTTCTGATTTGGGAAGCATTAGTTGCCTCTCTACGATAACCACTGATCAAACACAAGCTCCAAACACCACCAACTTCATTGTCTCTAACCAACTAGATCAAGAGGTCCAATCCCAATTCATTAACCCACCAGAAAACATTAACGTCCAGTCACACCATAATAAAGAAGCTGCATCTTCATGTTCATCGCCTTCGTCATCTTCTTCCTCTAATATCACACAACTAAGCCCACCTCCTCAGGTTATTACAACTGCTGCTGCTGTTCCTCCTCCTGGTTCGTCGTTTGATTGGAGCGAGTTTCTTCTGAGTGACCCGCTCACGTGCACCGAGTTTCAACCGCTGAACCAGTACGAGGTGCAGAACCAAATTCAAGTTTCGAATAATGCAAGTGATGAGGATTTTGGGATTGGGGCTTATCATGAGGAAAGCATCACGAAACGCCAAGTTTGTGATAAGCAAAATTGTGAAGGCACTTCGTCTTCTTCTTCGGGTGACGACTCATTCGTGGATGCTATTTTGAACAGAGATAGTGAAATAAGGGCAGCATTACTCCTAGACGGATCCACTGATTACTAG 972 0.4465 MGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHRAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPITHKPVSQVLSDLGSISCLSTITTDQTQAPNTTNFIVSNQLDQEVQSQFINPPENINVQSHHNKEAASSCSSPSSSSSSNITQLSPPPQVITTAAAVPPPGSSFDWSEFLLSDPLTCTEFQPLNQYEVQNQIQVSNNASDEDFGIGAYHEESITKRQVCDKQNCEGTSSSSSGDDSFVDAILNRDSEIRAALLLDGSTDY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2017 323 FunFam transcription factor MYB80 69 129 - -
Alju01g2017 323 Gene3D - 68 131 - -
Alju01g2017 323 MobiDBLite consensus disorder prediction 184 209 - -
Alju01g2017 323 FunFam Transcription factor RAX3 7 67 - -
Alju01g2017 323 CDD SANT 69 112 IPR001005 -
Alju01g2017 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju01g2017 323 CDD SANT 17 61 IPR001005 -
Alju01g2017 323 Gene3D - 7 67 - -
Alju01g2017 323 PANTHER F14D16.11-RELATED 1 317 - -
Alju01g2017 323 SMART sant 13 63 IPR001005 -
Alju01g2017 323 SMART sant 66 114 IPR001005 -
Alju01g2017 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju01g2017 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Alju01g2017 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju01g2017 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Alju01g2017 323 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Alju01g2017 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2017 Alju-ChrAlju01 16872422 16873737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2017 1 315 MYB Transcription Factor Family AT3G28470 49.390 2.23e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g2017 Myb_DNA-binding 2.5e-16 CL0123