Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2005 ATGACGAAGAGAACAACAAATGACTCCAGTGGTCAATCCCATGACCATGGAGGAGGCGGAGATATAAGAGAAGGAGGAGGAGCTGCTTTACAGAATTTGACTAACACCCATATGTTCAATCCCATGACCATGCATGTCATGATTGACCTTTCTGAAGTTGGAGAAAAGGTGAAGGAACTATTCGAAGGGCATAACGATTTGATTTCTGGTTTCAATGCCTTCTTGCCAAAAGGCTATGAGATAAGTCTTGATGATGAGAATGAAGCTCCCCCAAGAAAGAAAGGGGTTAACTATGAAGAAGCTCTGGATTTTGTATACAAGATAAAAGAACGATTTCACGATGATGATCATGTATACCAGTCATTCAAGGACATTTTGAATATGTACCGATCAAATGTTATGGATATAGCAGAGGTCTATATGGAGCAATATGGTCAACGAGATAAGCTTATTACTTCTCATGATGACATTCTCAGCATTCATTCATCTAAGCTGGATAGTGGCAAAGCAATGATTAAAAAGCACAAGAAGCATAAGAAGCAGGTTGAGGAAATTAAGGATAGGAGAGTTCTTGATCGGAATGAGAGAAAACATGAACTTTCTAATAACCGAACGCTTCGCCAAGTATGTAATTTCTTCAGTGAAGTTGAGGAGAGGTTGGGCAGCTCAGGCCTCCAGGAATTCTTGTCATACTTTGAAATGTACGAAACTGGAAAAATAAAAAGGAAAAATTTAAATGATTTGGTAGCCACTTCTATTGGAGAGTTTCCTGATCTAATGGATGAATATAAAAAATTCGAGAGCGAAGGTGAAAATATTGGATCATTTGGTGGTGACGATCGATTACTCAGATCATCAAAGTTGGAAGACAGAGAAAGAGACCAGAAGTGTGAGGTGATTGTGTCTAAAGAGAGTAAAGAAAACAATGAGAAATACAATGCTTTCGTGGACCAAACTGAAAATACTGAATCATTTAGAAGTGACGATCGATTACTCAAATCATCAAAGTTGGAAGACAGAGAAAGAGACCATAAGTGTGAGGTGACTGTGTCTAAAGAGAGTAAAGAAAACCATGAGATATACAATGATTTCGTGGACCAAGCTGAAAATACTGGTCAATTACAAAGATCACCAAAGTTGGAAGACAGAGATAAAAACCAGAAGCGTGAGGTGCTTGTGTCTAAAGAGAGTAAAGAATGGATCGAGTGGCTTTTTGGTTTTGAGGAAGAAGGTCCTCCCATGTTCAAATCCGACAAAGAGAGTAAAGAAAAGCATGATGAGAAATACATGGGGATTTCAATTCATAAACTTGACCTTAGTGATTGTGAACATAGTAACGCCAGCTACCGGCGTCTTCCAGAAGATTATCCAATTCCTATCCCTAGTCGCAGATCTGAGCTTGGTACTGAAGTATTGAATGATCACTGGGTATCTGTAACTTCAGGAAGTGAGGAAGAAGCTTTCAAACATTTGCGCCGGAATCCGTATGAAGAAACCTTGTTCCAATGCGAAGAAGACCAATTTGAGCTGGACTTGTTAATAAAGCGTGTGACGTCAACTGCTAAACATGCAAAGGACTTTTACAATAGCATAACTGGAAACGAAATCAATATTAAGAATCCAATCCGTATTGAAAAATACCTTAGTGTTTTGCATATAAGATGCATTGAGAAACTGTATGATGACCATGGTCTTGAAGTTATAGAGGCATTACGTAAGAATCCTGTTGTTGCTTTGCCTGTGATAATGAGGCGACTACAGCAGAAAAGGAAGGAATGGAGGAAGCGTCGTTCAGAGTTCAACAAGATCTGGGCGAAAGTTTATGCTAAAAACCACGAAAAATCACGTGATCATCGTAGTCTCAGTTTCAAACAAGAAGATTCCAAGAACTTGAATCCAAAAGCTTTGATGGCTGAGATCAAAGGAATCAAAGAGAAGCTGCCGAACCAGGAGTGGCTCCAGGCCACTGCTGCTGGATATAAACTATCTCCAATTCCGCATATGCAATTTGAATATTCAGATGTTGAGATTCACGAAGACCTATATAAACTTGTTTGTTATGCAAGTAAAGAGATCGTTGGAAGAAAATGCTTGTTAGATAAAATGTTGGGAATCTGGACTACCTTCTTGGAGCCAATGCTTGGTGTTCATTCTCGGTCTGATAAGTTGGCAGCTACAGAGAATAGGAGAGATGGTTCAGAAAATGTAGATTGTAATGCTGAAGTTTCTGTAGCCAAGTCTCAAAGTGGCAATGTATCTAGGGTGGAGTCTGCTACCTTGGTACTTCAGCGTCGTGACATTGCAACTCCAGATTCTTTGGCCAACAGAGTTCTAATTCAAAGCAATAACCAAGAAGAAAAGGAAGAGGGTGAAATATCTCCCTCACTAAATGGTGATTACGACGACGACGCTTTTGAAGGTGGTGAAGATGTCTCAGGTAGGGAGTACTCTCTGGAAGAACATGAGGGGAAGGGAGATAAGGAACATGATGATATTGATGATAAAGCTAAAATTGAGAGAATGTGTAATGCACAATCTTCTACAGATGGCTCATTGTTAGAAAGCTCCTTTTTGTCCGCGAAACCTGTTTCAAAGTACATACCGCCAGTTTTACTGGAAGAAAGGAGAGAATCAAGGGTTATCTATGGAAATGATGATTTCTACGTGCTTTTCAGGCTTCATCATATTTTGTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAAGTCTGAAGTGAAGCGTAGAGTTGCCAAGAATGCTAATTCTCCAGACCCATATTCAAGATTTATGAATGCCCTTTACAACTTCATTGGTGGATCTGTTGACGAAGCAAAGTTTGAAGGTGAATGCCTAGCAATTTTTGGAAACCAGTCATACATGTTATTCACATTGGACAAGTTGATCCATAAATTGGTTAAACAGCTTCAAGTGGTTGCAAATGCTGAAATAAATGATAAAATTCTTCAGTTGTTTGAGTATGAAAATTCTCAGAAACCTGAGAGCCTAACTCATTTAGCGTATCTTGGGAATGCACGTGTGATCCTCCCCGACGAGAATATATATCGCCTGGAATACTCATCTGGCCCTTGCAAACTATTCATCTGGCTAACGGACAGAACAAATGAAATGCCAGCAGCCATTAATCCAAATTATGCTGATTATCTTTACAATGATTTTCTATCAGTCTTTCCTCTTAAAGAGGAACCCAAAGGAATTATAATACAAAGGCGCAAGCGCAAGCGTGGTGCTTCAGATGAGTTTCCAGATATGGAGGGTGTTATAGTAATTAACCAATTAGAGCATGTGATGGCTTGCAACTCATCCAAGGTGATGTATGCTCCATACAAAGAAGACGTCTTATATCGCCGCCGAAAGAAGCAAAAGACATGGTCCAAAGATAACAAAGCAAGAGAAGATAGATACCACAGGTTTTTCTGTAGAAACTAA 3450 0.3936 MTKRTTNDSSGQSHDHGGGGDIREGGGAALQNLTNTHMFNPMTMHVMIDLSEVGEKVKELFEGHNDLISGFNAFLPKGYEISLDDENEAPPRKKGVNYEEALDFVYKIKERFHDDDHVYQSFKDILNMYRSNVMDIAEVYMEQYGQRDKLITSHDDILSIHSSKLDSGKAMIKKHKKHKKQVEEIKDRRVLDRNERKHELSNNRTLRQVCNFFSEVEERLGSSGLQEFLSYFEMYETGKIKRKNLNDLVATSIGEFPDLMDEYKKFESEGENIGSFGGDDRLLRSSKLEDRERDQKCEVIVSKESKENNEKYNAFVDQTENTESFRSDDRLLKSSKLEDRERDHKCEVTVSKESKENHEIYNDFVDQAENTGQLQRSPKLEDRDKNQKREVLVSKESKEWIEWLFGFEEEGPPMFKSDKESKEKHDEKYMGISIHKLDLSDCEHSNASYRRLPEDYPIPIPSRRSELGTEVLNDHWVSVTSGSEEEAFKHLRRNPYEETLFQCEEDQFELDLLIKRVTSTAKHAKDFYNSITGNEINIKNPIRIEKYLSVLHIRCIEKLYDDHGLEVIEALRKNPVVALPVIMRRLQQKRKEWRKRRSEFNKIWAKVYAKNHEKSRDHRSLSFKQEDSKNLNPKALMAEIKGIKEKLPNQEWLQATAAGYKLSPIPHMQFEYSDVEIHEDLYKLVCYASKEIVGRKCLLDKMLGIWTTFLEPMLGVHSRSDKLAATENRRDGSENVDCNAEVSVAKSQSGNVSRVESATLVLQRRDIATPDSLANRVLIQSNNQEEKEEGEISPSLNGDYDDDAFEGGEDVSGREYSLEEHEGKGDKEHDDIDDKAKIERMCNAQSSTDGSLLESSFLSAKPVSKYIPPVLLEERRESRVIYGNDDFYVLFRLHHILYERILSAKTNSMKSEVKRRVAKNANSPDPYSRFMNALYNFIGGSVDEAKFEGECLAIFGNQSYMLFTLDKLIHKLVKQLQVVANAEINDKILQLFEYENSQKPESLTHLAYLGNARVILPDENIYRLEYSSGPCKLFIWLTDRTNEMPAAINPNYADYLYNDFLSVFPLKEEPKGIIIQRRKRKRGASDEFPDMEGVIVINQLEHVMACNSSKVMYAPYKEDVLYRRRKKQKTWSKDNKAREDRYHRFFCRN 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2005 1149 SUPERFAMILY PAH2 domain 45 77 IPR036600 GO:0006355
Alju01g2005 1149 Pfam Sin3 family co-repressor 446 533 IPR013194 -
Alju01g2005 1149 Gene3D Paired amphipathic helix 93 165 IPR036600 GO:0006355
Alju01g2005 1149 ProSiteProfiles PAH domain profile. 92 168 IPR003822 GO:0006355
Alju01g2005 1149 MobiDBLite consensus disorder prediction 779 831 - -
Alju01g2005 1149 Pfam Paired amphipathic helix repeat 48 75 IPR003822 GO:0006355
Alju01g2005 1149 MobiDBLite consensus disorder prediction 807 831 - -
Alju01g2005 1149 SUPERFAMILY PAH2 domain 91 142 IPR036600 GO:0006355
Alju01g2005 1149 SMART hdac_interact2seq4b 441 541 IPR013194 -
Alju01g2005 1149 SUPERFAMILY PAH2 domain 202 267 IPR036600 GO:0006355
Alju01g2005 1149 Gene3D Paired amphipathic helix 28 78 IPR036600 GO:0006355
Alju01g2005 1149 MobiDBLite consensus disorder prediction 366 388 - -
Alju01g2005 1149 Pfam C-terminal domain of Sin3a protein 882 1121 IPR031693 -
Alju01g2005 1149 Gene3D Paired amphipathic helix 202 268 IPR036600 GO:0006355
Alju01g2005 1149 PANTHER SIN3B-RELATED 47 995 IPR039774 GO:0003714
Alju01g2005 1149 MobiDBLite consensus disorder prediction 1 28 - -
Alju01g2005 1149 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2005 Alju-ChrAlju01 16705785 16715451 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju01g2005 Sin3a_C 1.9e-41 No_clan