Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2003 ATGTCTTCGTCTGTTCCTCAAGAATCTGATTTCACCCCACAGATCTACTCCCGGAAAGACAAGTCACTTGGATTACTTAGCTCTAACTTCCTCAAGTTATATAATCGCGAAGGTGCTGGGACGATTGGACTTGACGATGCTGCTTCTCGACTAGGAGTTCAGCGTCGCCGCATGTACGATGTAGTCAACATATTGGAGAGTGTTGGAATTGTGGCCAGAAAAGGGAAAAATCTATACTTATGGAAAGGTTTCAGAGAAATTCCTCGAGCTTTGAACGAGCTTAAGGAAGAGGCTATGAGGGAAAAATTTGATGCAGCCTACTGCAGGTCAGCTGAAGCATCAAAGAACAAAGAAACCGGTGGTTCTGAAGCTAAGACTGATCCTTTGGTTCCGTCATTGCCCAAAACTGACAGCTGCAGAAGAGACAAATCCATGGCACTTCTGACGGAGAATTTCATAAAGCTCTTCCTCTGTTCAGATGTTGAAATTGTCTTGCTTGAAGATGCTGCAAAGATAATGCCGGGCGATGCTCAGAATTCAACTGCCTTGAGAACAAAAGTCAGACGTTTATATGACATAGCGAATGTCCTTTCATCTATCAATCTGATCGAGAAGACAAATCACCCCGAGTATAGGAAAACAGCATATAGGTGGTTGGGAGGGAAAGCCAGTAGAGAATCTGATGGCAGCTTGGATCAAAGTGCATCCAGGAAGAGAGTGTTTGGAGCGGAAATTACAAATTACAGTTTAAAGAGAAAGAAAACAGATTCCTCAATGGATTCGCAGTCCCATAAAATGATTATGCCAGTGTATGGAAAACAAGATGAGTTGGAAAATGAATACAGATGTAAAACTTTGGAGCACCCCCTTAAATGCAGTTCAAAGGCCATAGACTTTGGCCCTTTCGCTCCTGTCAAGTTTAGAAGAGAAGATCAAGAGAACAGACATATGAGACAGGTTCATGACGTGGAGAGAATGAGTTCTAAATATCGCCCTGAGTATCACAACCGAGGGACCCAATTGTAA 1026 0.4298 MSSSVPQESDFTPQIYSRKDKSLGLLSSNFLKLYNREGAGTIGLDDAASRLGVQRRRMYDVVNILESVGIVARKGKNLYLWKGFREIPRALNELKEEAMREKFDAAYCRSAEASKNKETGGSEAKTDPLVPSLPKTDSCRRDKSMALLTENFIKLFLCSDVEIVLLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPEYRKTAYRWLGGKASRESDGSLDQSASRKRVFGAEITNYSLKRKKTDSSMDSQSHKMIMPVYGKQDELENEYRCKTLEHPLKCSSKAIDFGPFAPVKFRREDQENRHMRQVHDVERMSSKYRPEYHNRGTQL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2003 341 Pfam E2F/DP family winged-helix DNA-binding domain 142 220 IPR003316 GO:0005667|GO:0006355
Alju01g2003 341 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Alju01g2003 341 FunFam E2F transcription factor 8 13 85 - -
Alju01g2003 341 Gene3D - 134 222 IPR036388 -
Alju01g2003 341 Gene3D - 12 85 IPR036388 -
Alju01g2003 341 FunFam E2F transcription factor-like E2FE 135 222 - -
Alju01g2003 341 MobiDBLite consensus disorder prediction 114 136 - -
Alju01g2003 341 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Alju01g2003 341 SMART E2F_TDP_2 140 220 IPR003316 GO:0005667|GO:0006355
Alju01g2003 341 SUPERFAMILY "Winged helix" DNA-binding domain 142 220 IPR036390 -
Alju01g2003 341 PANTHER TRANSCRIPTION FACTOR E2F 7 287 IPR015633 GO:0000978|GO:0006357
Alju01g2003 341 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2003 Alju-ChrAlju01 16676196 16680412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2003 1 337 E2F-DP Transcription Factor Family AT3G01330 47.989 5.95e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Alju01g2003 E2F_TDP 1.7e-17 CL0123