Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1995 ATGGCGACGAATAGATTTGTGTGCGAGATATGCAACAAGGGATTTCAGAGGGACCAGAACCTGCAGCTGCACAGGAGAGGGCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCCACCTGCGTGCACCATAACCCAGCCCGAGCACTGGGAGACCTCACAGGCATCAAGAAGCATTACAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAACGATACGCCGTCCAATCTGACTGGAAGGCCCACCACAAAACCTGTGGCACCCGCGAATACAAATGCGATTGTGGCACCATTTTCTCCAGGAGAGATAGCTTCATCACGCACAGGGCTTTTTGTGACGCGTTAGCTGAAGAAAACAACCGAGTGAACCAGGGATTAAGCAGCGGCATGCAATCAAACATGCAAAATCATCAGGTGGCAGATCTTATGCCCACTATGCCTCTCACCACCTCCTCCGAATTCAACCACCCACTCAGGCCCATCTCCCAGGACCTCGGCTCAAGCCCATTCAAGCCCACCAGCATGGGTGGGCCCATGTTCTCCACAACATCCACTTCCCTCTTCGCTGGCCCAAAGCCCATCTCTCCCTCCTCCTCCTCCGCCCTCCAGCTAAGCTTCAACACTTCCTCTCCCAATTTTAGCTACTTCCCCACAGACACCAACCCAATGTTTTCTGGGTCGGCCCAAATGTCAGCAACGGCCTTGTTACAGAAAGCGGCCCAAATAGGTGCCACCGCAAGCAACAACAGCATCAACTCTCCCATGATGCAAAAGAACTTGGTCGCTAGTACTATGGCTGGTCCTGATCATAATAATGTCTCTTCCATTAATAAACCACCATTTTCTGCTGCTGATTCTTCCTCCTACGATCAACCCAACATGGCTGGGATTAGTGGTGCTGGACCATTCACCAATCGACTGTTTCAGAATAAAGTCCCACAAGAAATTTCAGAACTGTTTGATGCCACTAGTGCTGTTGCTGCTGCTACTGGATCTGCAATTACTGATATGGGTGTGTTCGGCCAGATTTTCCTTGCAAGTGATCAGAACCAGGGATCAATGATGAAGAACAATGTGGAACGAGAGAACAACAGTACTACTGCTAGTTCAAGTTTGATGATGCATGGGAGAGATGTAAGAGAAGAGAATCCGATGGGGCCTAATCATACTATGGCAACGGTTCATGATTTCTTGGGTGTTGGTGGCGGTTCGGCGAATTTTCATGAGCCAGATCAGCAACAAAGGTTGGAGTTAGAAGCGATGAATCATCAGAGAGTATCATCAGTTATGAATCACTTTCATCAACACCATAATCTTCCTCGTGGGGATTCACCTTTGGATAAAACCATTTGGGATGTTTGA 1416 0.4929 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNRVNQGLSSGMQSNMQNHQVADLMPTMPLTTSSEFNHPLRPISQDLGSSPFKPTSMGGPMFSTTSTSLFAGPKPISPSSSSALQLSFNTSSPNFSYFPTDTNPMFSGSAQMSATALLQKAAQIGATASNNSINSPMMQKNLVASTMAGPDHNNVSSINKPPFSAADSSSYDQPNMAGISGAGPFTNRLFQNKVPQEISELFDATSAVAAATGSAITDMGVFGQIFLASDQNQGSMMKNNVERENNSTTASSSLMMHGRDVREENPMGPNHTMATVHDFLGVGGGSANFHEPDQQQRLELEAMNHQRVSSVMNHFHQHHNLPRGDSPLDKTIWDV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1995 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Alju01g1995 471 Gene3D Classic Zinc Finger 6 48 - -
Alju01g1995 471 MobiDBLite consensus disorder prediction 284 314 - -
Alju01g1995 471 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Alju01g1995 471 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Alju01g1995 471 Gene3D Classic Zinc Finger 60 140 - -
Alju01g1995 471 MobiDBLite consensus disorder prediction 284 312 - -
Alju01g1995 471 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Alju01g1995 471 SMART c2h2final6 6 28 IPR013087 -
Alju01g1995 471 SMART c2h2final6 47 77 IPR013087 -
Alju01g1995 471 SMART c2h2final6 82 102 IPR013087 -
Alju01g1995 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 437 IPR031140 -
Alju01g1995 471 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1995 Alju-ChrAlju01 16593946 16595831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1995 1 269 IDZ Gene Family AT3G50700 54.072 7.83e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1995 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1995 01 16593946 16595831 Alju01g1995 01 16593946 16595831 ECH