Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1992 ATGGCGCGCTATTTGGCGGGGAGTGAGTCAGTGAAGGGAGGAAAGAAAGAAAGAGCAGAGACTCCGTTCCTGTGTGAACGCATCTCCGTCACTCGGAATCACGACGGAACCGAGCAAGGAGCAAAAGCGTCTCCGATCTCTCAGAACATTCTAGACCGCTGTAAATTCCTTGTGCAGAACCATTTCGGGCCTGTAAAGTCTGTGAGTTGTACAGGATCCTCAGCACAAACAGCCATTTCCATGGAGCTGTACGGTCGGAATCCGGCTAGGAATGGGTCGCAACCCGGTAATCAATCTGAATGGCACCCGTCAGGCGGCGAGACTGGGCTTGAAGAATCGATGTGGCACTTAACCATCGGTGGCAGCGAATCTTACCCGGAGCGACCCGGCGCACCCAATTGTGTATATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGCGCCGCGGTTGCTGCAGCTGTGAGGGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGCCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAGATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTAAATATTTATGGATACCCGTTACGTCCGGGCGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCCGTCCTTCTTTCTACAGGGGTTGTTCCCTTTCCAGGATGGAGTCCGTATACGGCACCTGTGAGTCCTGTGTTATCCCCTGGTGCTCAGTCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTACTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACATATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACGGGGGACTGCAAATATGGATTAGCATGTCGATTTCATCATCCCAGGGACCGGACAGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGGTCTGTGAGATACAGTCCATCAGCATCGTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCATTGCTGTCTACCCTGGCTCCTTCAACAACATCTTCAGAGCTTCGGCCTGAACTTATGTCAGGCGCAAAAGTGGAATCTTTTGCTTCTAGAATACCATCCTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACTGTCTCTCTTTCTGATGTGCAGCTCTCAAGTCAAACTGCTACTCCTTTAGGCAGTAGCAGAAGCACTCGACAAAGTGGTGACATACGATGA 1656 0.4952 MARYLAGSESVKGGKKERAETPFLCERISVTRNHDGTEQGAKASPISQNILDRCKFLVQNHFGPVKSVSCTGSSAQTAISMELYGRNPARNGSQPGNQSEWHPSGGETGLEESMWHLTIGGSESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCRFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSILPGSYVQGAYGPVLLSTGVVPFPGWSPYTAPVSPVLSPGAQSAVGATSLYGVTQLSSSTSAFARPYTPLPSTTGLSGSGLKEHIFPERPGEPECQYYLRTGDCKYGLACRFHHPRDRTVTRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGAKVESFASRIPSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQTATPLGSSRSTRQSGDIR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1992 551 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Alju01g1992 551 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Alju01g1992 551 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Alju01g1992 551 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Alju01g1992 551 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Alju01g1992 551 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Alju01g1992 551 MobiDBLite consensus disorder prediction 86 107 - -
Alju01g1992 551 SUPERFAMILY CCCH zinc finger 133 157 IPR036855 GO:0046872
Alju01g1992 551 MobiDBLite consensus disorder prediction 90 104 - -
Alju01g1992 551 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Alju01g1992 551 SUPERFAMILY CCCH zinc finger 177 200 IPR036855 GO:0046872
Alju01g1992 551 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Alju01g1992 551 SUPERFAMILY CCCH zinc finger 221 247 IPR036855 GO:0046872
Alju01g1992 551 PANTHER PROTEIN PHOSPHATASE RELATED 100 458 - -
Alju01g1992 551 SUPERFAMILY CCCH zinc finger 422 451 IPR036855 GO:0046872
Alju01g1992 551 Gene3D - 207 254 - -
Alju01g1992 551 SUPERFAMILY CCCH zinc finger 380 405 IPR036855 GO:0046872
Alju01g1992 551 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Alju01g1992 551 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Alju01g1992 551 Gene3D - 125 206 - -
Alju01g1992 551 Gene3D - 375 457 - -
Alju01g1992 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 200 IPR000571 GO:0046872
Alju01g1992 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 422 446 IPR000571 GO:0046872
Alju01g1992 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Alju01g1992 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 155 IPR000571 GO:0046872
Alju01g1992 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Alju01g1992 551 MobiDBLite consensus disorder prediction 528 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1992 Alju-ChrAlju01 16548290 16553421 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1992 81 496 C2H2 Transcription Factor Family AT5G18550 52.294 2.17e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g1992 zf-CCCH 6.3e-08 CL0537