Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1990 ATGGAGTTGTACGGTCGGAACCCGGCTAGGAATGGGTCGCAACCGGGTAATCAATCTGAATGGCACCCATCTGGCGGCGAAACATGGCTTGAAGAATCGATGTGGCACTTAACCGTCGGTGGCATCGAATCTTACCCGGAGCGATTTGGCGCACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCTGAACGAGTGGGGGAGCCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGCTCATTAAGTCAAGCTCCACTAAATATTTATGGATACCCGTTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACGGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAGCAGCTTGAGAGTGGCCAGGCCTTCAATATTACCTGGTTCATATGTGCAAGGGGCTTATGGTTCCGTCCTTATTTCTCCAGGTGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTTTGAGTCCTGTGTTATCTCCTGATGCCCAGTCTGCTCAGTCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTCCATCTGCATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTACTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACAAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCATGTCGATTTCATCATCCCAGGGACCAGACAGTCACCCGGTCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGTTAGTACAGCCTCATACTTCAAAGATATGTTCAACTTGCTTTCTACTCCTCTGTGGATTGGTTAA 1098 0.4909 MELYGRNPARNGSQPGNQSEWHPSGGETWLEESMWHLTVGGIESYPERFGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASSSLRVARPSILPGSYVQGAYGSVLISPGVVPFPGWSPYTAPLSPVLSPDAQSAQSAVGATSLYGVTQLSPSASAFARPYTPLPSTTGLSGSGLKEQIFPERPGEPECQYYLRTGDCKYGLACRFHHPRDQTVTRSLLSPIGLPLRPVSTASYFKDMFNLLSTPLWIG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1990 365 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Alju01g1990 365 SUPERFAMILY CCCH zinc finger 303 328 IPR036855 GO:0046872
Alju01g1990 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Alju01g1990 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Alju01g1990 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Alju01g1990 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Alju01g1990 365 Gene3D - 125 174 - -
Alju01g1990 365 MobiDBLite consensus disorder prediction 10 24 - -
Alju01g1990 365 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Alju01g1990 365 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Alju01g1990 365 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Alju01g1990 365 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Alju01g1990 365 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Alju01g1990 365 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Alju01g1990 365 MobiDBLite consensus disorder prediction 1 24 - -
Alju01g1990 365 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Alju01g1990 365 PANTHER PROTEIN PHOSPHATASE RELATED 39 346 - -
Alju01g1990 365 Gene3D - 292 348 - -
Alju01g1990 365 Gene3D - 47 123 - -
Alju01g1990 365 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Alju01g1990 365 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Alju01g1990 365 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1990 Alju-ChrAlju01 16536957 16539008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1990 1 344 C2H2 Transcription Factor Family AT5G18550 51.657 2.83e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g1990 zf-CCCH 9e-10 CL0537