Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1989 ATGTGCCAAAGAATGCGCTACAATTTCTACACAAAAAAAGGAACTGGTTTTGATGAGTTATTTTCTGAGCTTTTCCTTCTCTGCCCCACAATGCCACTTCATTTATTGATTTATGTCTCACATATGCTTTGTTTTCACGTTTCATTAGTTAATCATACCTTGATGGTGTTAGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCCACTTGTAAATTTGACCATCCTTTGGTGTCTGTGAGATACAGTCCCTCAGCATCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACAGCATCTTCAGAACTTCGGCCTGAACTGATTTCAGGCACAGAAGTGGAATCTTTTTCTACTAGAATGTCATCCTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCCCAAGGTGGAACTGTATCTCTTTCTGATGTGCAACTCTCGAGTCAAAGCCCTACTCCTTTAGGAAGTAGCAGAAGCACTAGACAAAGTGGTGATATACGATGA 564 0.4149 MCQRMRYNFYTKKGTGFDELFSELFLLCPTMPLHLLIYVSHMLCFHVSLVNHTLMVLGVQPCVFYLQNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTASSELRPELISGTEVESFSTRMSSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQSPTPLGSSRSTRQSGDIR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1989 187 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 82 IPR000571 GO:0046872
Alju01g1989 187 SUPERFAMILY CCCH zinc finger 55 84 IPR036855 GO:0046872
Alju01g1989 187 Gene3D - 50 110 - -
Alju01g1989 187 ProSiteProfiles Zinc finger C3H1-type profile. 57 84 IPR000571 GO:0046872
Alju01g1989 187 SMART c3hfinal6 56 83 IPR000571 GO:0046872
Alju01g1989 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1989 Alju-ChrAlju01 16534205 16534986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1989 46 141 C2H2 Transcription Factor Family AT5G18550 48.000 1.23e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g1989 zf-CCCH 3.2e-08 CL0537