Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1980 ATGGAAGGCCCTTCACCGCAAAACAGAGAGCACTTTGGGAAGTTGCAGTATGGATGCGAGCACTACAAGAGAAGGTGCAAAATTCGAGCTCCGTGCTGTGACCAGATCTTCCCATGTCGCCACTGCCACAACGAGGCCATGAGCTTGCTCGACAACCCCAAAGAGCGCCATGAACTGGTCAGGCGTGATGTTAAGCAGGTTATATGTTCAGTCTGTGATGCTGAGCAGGAGGTTGCCAAAGTGTGTTCTAAATGTGGTGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACAGATAAAGGACAATTCCATTGCGAGGAATGTGGAATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCATTGTCAGAAATGCGGATCATGCTATGCAGTGGACCTGAAAAATAATCACTCATGTGTAGAGAACTCAATGAAGAGCCACTGCCCCGTCTGCTATGAGTATCTGTTTGATTCAATTAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGTTGTCGAGAGATGGCGGCCCAAAATCAGTATCGTTGTCCTGTCTGCTTGAAGTCAATATTCGATATGTCAGAGAATTGGAGGAATCTAGATCTTGAGATTGAAGCTGTTTCAATGCCTCTGGAGTGTAAGATTGAGGTCTCGATTCTGTGCAACGATTGCAATACCACCAGCAAAGTATCGTTTCACATTTTAGGTCACAAGTGCAGCCAGTGCGGTTCGTACAACACCCGTAGGATTTCAGCACCTGAAGATAAATGA 801 0.4482 MEGPSPQNREHFGKLQYGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSLLDNPKERHELVRRDVKQVICSVCDAEQEVAKVCSKCGVNMGEYYCEICKFYDDDTDKGQFHCEECGICRVGGRDNFFHCQKCGSCYAVDLKNNHSCVENSMKSHCPVCYEYLFDSIKGTTIMKCGHTMHMECCREMAAQNQYRCPVCLKSIFDMSENWRNLDLEIEAVSMPLECKIEVSILCNDCNTTSKVSFHILGHKCSQCGSYNTRRISAPEDK 266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1980 266 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Alju01g1980 266 Pfam Zinc-ribbon 201 258 IPR039512 -
Alju01g1980 266 SMART ring_2 154 196 IPR001841 -
Alju01g1980 266 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Alju01g1980 266 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Alju01g1980 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 218 IPR013083 -
Alju01g1980 266 SUPERFAMILY RING/U-box 153 201 - -
Alju01g1980 266 Gene3D - 224 264 - -
Alju01g1980 266 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Alju01g1980 266 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 266 - -
Alju01g1980 266 Pfam RING-type zinc-finger 154 194 IPR027370 -
Alju01g1980 266 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Alju01g1980 266 SUPERFAMILY CHY zinc finger-like 15 88 IPR037274 GO:0008270
Alju01g1980 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 264 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju01g1980 Alju-ChrAlju01 16415332 16418391 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1980 3 262 C2H2 Transcription Factor Family AT3G18290 41.199 2.08e-54 187