Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1967 ATGAGGCACCACAAGAGGATGAGCGGTATAGCTGCTGTTGCGAACAAAGCGTCCCCAGCGAATCACTCCCCAAAAAATGGCGACGGAACTCCGACATTTCACTATGGCGGACTCTCCGGGGAAGGTGAGAAAGATGTTTTGAATGATTCACTGTGGCAAGCATGCGCCGGTTCTTCTGTCGTTGTTCCTCGCACTGGGGACTTGGTCTTCTACTTTCCCCAAGGCCACTTGGAACAGGTGGCTGACTTTACTCGCCAGGATGGTCACATGGAACTTCCTGCTAGTGATTTGCCTTCTAAAATCCTTTGCAGGGTCTTGGGTGTTCAACTCAAGGCTGAAGCCAACACAGACGAGGTTTTCGCTCAAATTACTTTAATTCCTGAGTCAAAGCTAGATGAAGTTAGTTCAGATGATAAAGAGTCTCGACCAAAACCCAGAACTACTTCCAGATGCTTTAGTAAGACGCTCACCCTATCAGATACAGGTGCACACGGTGGATTCTCCATTCCAAAGAAACTTGCCGAGGAATGCTTCCCACCGCTGGATATGTCTCAGCAACCACCAGGACAAGAGCTTGTTGCGAAAGACTTGCATGGTGTTATATGGACTTTTCGCCATACCTATCGGGGTCAGCCGAAACGACACCTGCTTACTGGTGGCTGGAGTTCATTCCTCCATTCAAAAAAGCTTGAACCCGGAGATACATGCATTTTTCTTTGCGGAGAAAATAGAGAACTTGGCATTGGGATCCGTCGAGCACTTCAACAACACAACAGAGCATCCTCATCCACATGCGTGATATCTGGCCATAGCATGCTACTCGGGATATTAGCCACTGCTTCTTATGCTGTTGCTACTGGATCCATGTTTACTGTCTACTACCGTCCTTGGACTTGTCCCTCTGAATTTATTGTTCCACTGGGTCAATACATGAAGTCAAATAAAATGAAATATTCATGTGGAATGAGGATACAAATGGAGTTTGAAACCGAAGAATCTACAAGAAGGTATGCAGGAACCATAATAGGTACTGTTGATTTTGATGGCATGAAGTGGCCTAATTCAGAATGGAGATGTCTCAAGGTGAAATGGGACGCGAAGATTGATATAGATATGCGTCCAGAAAGGGTCAGTCCTTGGAACGTTGAGCCCTTGGAATCTTCCGGGAAGAACATTCCTAATCCAGCCCCACCAAAGAGGCCACGGCTACTTGGTTCATCAATGTCTGGATTATTCGATCTTGCCAAGGATGACATCGATCTGAACTCAGCCAACAATGCTTCTCGGAGATGTGAAAGGGACTTACAAGGTCAAGATAACAAAGAAGTAGGCTTCCAACAATATGGCTCTCAGTTCAGGACGAAGAATCAACCGCATTTTCAACTGAGAATCCCTCCTTGCAATTCTCTTGGCGGCTCAGCATCATTTCCAGATGATGACATTTCAACTTCAAGCCCCCACAAACAGCCCCCAATCCCAACCACTTACGCCGCATGCAATAATGTCCCCGTCACCAAGTACCTTCCACTCTCAAATGTGAACTCCAATGATTCTGAATCCCATGGACGTCGGGTCTCTGAATCAAGGGATGAGAATGATAGTAAAACTGAATACAAGCTTTTCGGGATAAGCTTGAACCACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTCTAGCAGTACTTCAACCCTTCATGTTCCTCCAATGTCTCAATCAAGCGTTTCTGCGACTATCCCGGTTTCCAAACTATCAAATGGTATTTCAGGTGTTACGTCGCAGAAAAAATGCAAGAAATGCAGCTCTGTCAATAGTAGGACTTGCACAAAGGTGCTTAAGCGTGGAAGTGCACTTGGTAGATCAATTGACCTCTCGCGTATCACTGGATACAATGACCTCATTTCTGAACTGGACTTGATGTTTGATTTCAAAGGAAGCTTAATAAATGGAAGCAGCGGATGGCATGTCGTCCCCATGGATGATGACGGGGATATGATGCTGTTAGGAGATTTCCCGTGGCAGGATTTTCAGTCCATGGTGCAAAAGATGATCATTTGTCCAAAGGAGGACTCCAACAACCGGAGTGCTATTGCTAGCACAGCAGACTCAACAACCCTGTAA 2118 0.4618 MRHHKRMSGIAAVANKASPANHSPKNGDGTPTFHYGGLSGEGEKDVLNDSLWQACAGSSVVVPRTGDLVFYFPQGHLEQVADFTRQDGHMELPASDLPSKILCRVLGVQLKAEANTDEVFAQITLIPESKLDEVSSDDKESRPKPRTTSRCFSKTLTLSDTGAHGGFSIPKKLAEECFPPLDMSQQPPGQELVAKDLHGVIWTFRHTYRGQPKRHLLTGGWSSFLHSKKLEPGDTCIFLCGENRELGIGIRRALQQHNRASSSTCVISGHSMLLGILATASYAVATGSMFTVYYRPWTCPSEFIVPLGQYMKSNKMKYSCGMRIQMEFETEESTRRYAGTIIGTVDFDGMKWPNSEWRCLKVKWDAKIDIDMRPERVSPWNVEPLESSGKNIPNPAPPKRPRLLGSSMSGLFDLAKDDIDLNSANNASRRCERDLQGQDNKEVGFQQYGSQFRTKNQPHFQLRIPPCNSLGGSASFPDDDISTSSPHKQPPIPTTYAACNNVPVTKYLPLSNVNSNDSESHGRRVSESRDENDSKTEYKLFGISLNHPELPSPQVAASSSTSTLHVPPMSQSSVSATIPVSKLSNGISGVTSQKKCKKCSSVNSRTCTKVLKRGSALGRSIDLSRITGYNDLISELDLMFDFKGSLINGSSGWHVVPMDDDGDMMLLGDFPWQDFQSMVQKMIICPKEDSNNRSAIASTADSTTL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1967 705 MobiDBLite consensus disorder prediction 520 534 - -
Alju01g1967 705 Pfam AUX/IAA family 595 685 IPR033389 -
Alju01g1967 705 Gene3D - 150 254 IPR015300 -
Alju01g1967 705 MobiDBLite consensus disorder prediction 382 405 - -
Alju01g1967 705 CDD B3_DNA 150 252 IPR003340 GO:0003677
Alju01g1967 705 ProSiteProfiles PB1 domain profile. 605 687 IPR000270 GO:0005515
Alju01g1967 705 MobiDBLite consensus disorder prediction 15 37 - -
Alju01g1967 705 FunFam Auxin response factor 150 254 - -
Alju01g1967 705 Pfam B3 DNA binding domain 152 252 IPR003340 GO:0003677
Alju01g1967 705 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Alju01g1967 705 MobiDBLite consensus disorder prediction 551 575 - -
Alju01g1967 705 MobiDBLite consensus disorder prediction 461 497 - -
Alju01g1967 705 Pfam Auxin response factor 280 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju01g1967 705 Gene3D - 600 694 - -
Alju01g1967 705 SMART B3_2 152 254 IPR003340 GO:0003677
Alju01g1967 705 FunFam Auxin response factor 317 389 - -
Alju01g1967 705 SUPERFAMILY DNA-binding pseudobarrel domain 147 260 IPR015300 -
Alju01g1967 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju01g1967 705 MobiDBLite consensus disorder prediction 475 497 - -
Alju01g1967 705 MobiDBLite consensus disorder prediction 510 534 - -
Alju01g1967 705 Gene3D - 317 391 - -
Alju01g1967 705 SUPERFAMILY CAD & PB1 domains 604 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1967 Alju-ChrAlju01 16270429 16276653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1967 34 689 B3 DNA Binding Superfamily AT1G59750 39.910 2.58e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju01g1967 AUX_IAA 2.1e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1967 01 16270429 16276653 Alju01g1967 01 16270429 16276653 ECH