LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1940	ATGAAGGAGAAGGCAGATTCCCCTGTTGGGGTTCTTGAGGACTATTTTAGGAGCTCTGAATCAGACACAAGTTCTTCGAAAGAACCCACCGTAGATTCTGAGGCTCAAGATAAGTCCAAATTTGGTTCTAAATGGCGTGGATTCCTGCAAAATATGACCAACAGGTCTAAAAAAGCCGTACCCACCACCATGCAACCTCCTCCTCTCAGTATGTTCAAGCTGTCTAAGAGAATGAGCAGAAGCATGAGAGAGACCATATTTCCAAGTTCACGCTTAGGGGTAGATTCGTCTCTCCACAATTCACCATGGAAGATCTTCACTCACAGGGAAATTCTACTTGCAACAAGTTCTTTCAGTCAAGAAAACCTTATTGGGAAAGGTGGGTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTAGTAGCAATTAAAAAGTTGACACGTGGAAGCCAAGATGATATTATAGGTGACTTCTTATCAGAACTTGGCATAATGGCACATGTTAATCACCCAAATACTGCAAAGCTAGTTGGCTATGGCATTGAAGGAGGCATGCACCTTGTTCTTGAGTTCTCTGAAAAAGGAAGCTTAGCTTCAGTACTTCATGGTACCAAGGAAAACCTGCCATGGTGTATTAGGTATAACATTGCTGTAGGAACAGCCAAGGGCATATTATATCTCCACGAGGGCTGTCAAAGAAGAATTATCCACAGAGATATAAAGGCAGCGAATATCTTACTCACAGAGGACTATGAGCCACAGATTTGTGATTATGGATTAGCAAAATGGCTGCCTGAGAACTGGACTCACCACACCGTTTCAAAATTCGAAGGAACCTTTGGTTATCTTGCTCCTGAGTACTTGCTTCATGGCATAGTAGACGAGAAAACAGATGTATTTGCTTTCGGTGTTCTGCTATTAGAATTAGTCACTGGTAGGCGAGCCCTTGATTATTCACAGCAAAGCCTTGTCTTGTGGGCAAAACCATTGTTGAAAAAGAACAGAATAAGGGAGCTGATAGATCCATCGCTAGGGGATGCGTTTGATACTCGGCAGATGAATCTTGTACTATTGGTCGCTTCTTTGTGTATACACCAGTCCTCCATTCGCAGACCCTCCATGAGACAGATTGTGCAGCTTATAAATGGTAATCTTAGCAGCTTTAAGAGCATGAAGAAGAGTCGATTGCCATTTTTCAGAAAGCTCTTCCAGGAAGAGCTCCTTGATTCTGAATAG	1242	0.4275	MKEKADSPVGVLEDYFRSSESDTSSSKEPTVDSEAQDKSKFGSKWRGFLQNMTNRSKKAVPTTMQPPPLSMFKLSKRMSRSMRETIFPSSRLGVDSSLHNSPWKIFTHREILLATSSFSQENLIGKGGYAEVYKGCLPNGQLVAIKKLTRGSQDDIIGDFLSELGIMAHVNHPNTAKLVGYGIEGGMHLVLEFSEKGSLASVLHGTKENLPWCIRYNIAVGTAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDYGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDYSQQSLVLWAKPLLKKNRIRELIDPSLGDAFDTRQMNLVLLVASLCIHQSSIRRPSMRQIVQLINGNLSSFKSMKKSRLPFFRKLFQEELLDSE	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1940	413	Pfam	Protein kinase domain	119	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1940	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	237	249	IPR008271	GO:0004672\|GO:0006468
	Alju01g1940	413	Gene3D	Phosphorylase Kinase; domain 1	80	193	-	-
	Alju01g1940	413	MobiDBLite	consensus disorder prediction	1	41	-	-
	Alju01g1940	413	Gene3D	Transferase(Phosphotransferase) domain 1	195	399	-	-
	Alju01g1940	413	PANTHER	OS08G0249100 PROTEIN	4	409	IPR046958	-
	Alju01g1940	413	ProSiteProfiles	Protein kinase domain profile.	118	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1940	413	ProSitePatterns	Protein kinases ATP-binding region signature.	124	147	IPR017441	GO:0005524
	Alju01g1940	413	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK2	89	192	-	-
	Alju01g1940	413	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	195	397	-	-
	Alju01g1940	413	SMART	serkin_6	118	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1940	413	SUPERFAMILY	Protein kinase-like (PK-like)	103	400	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1940	Alju-ChrAlju01	16005731	16007648	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g1940	105	379	Trihelix Transcription Factor Family	AT1G68690	41.404	2.62e-68	226

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Alju01g1940		Pkinase	4.3e-42	CL0016