Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1929 ATGTTGTTCTTCTCCTATTTCAAGGACTTGGTGGGCAGAGAAGTAACGGTGGAGCTCAAGAACGATTTGGCTATTCGAGGAACATTGCACTCAGTGGACCAATACCTTAACATCAAGCTCGAGAACACTCGCGTCGTCGATCAAGACAAATACCCTCATATGCTTTCTGTAAGGAACTGCTTCATCAGGGGATCGGTGGTAAGATATGTGCAGTTGCCTCCGGAAGGAGTGGACGTTGAACTTTTGCATGATGCCACAAGGAGAGAAGCTCGCGGGGAACTTTTGGCTGAGAGGGAGAGACATTCATACGACCCTATAGCACGGTTCCATTTTACTGTAACAGAATTTTTAACATTCCCACTGTTGGGCCTTATCAAGTTCCATGTTGTTCTAGTCAGTTCAATTCGCAGCATTGTCCTGCAGTCTGTTATTGTCGTTTTGAACGGGATGGACACTCAAGCAGACCTTCCTCAAACGCCAGCCAAAAGGCACAAGTGCGCAGCATGCTATAGGCAATATAAGAAAAGGGAACATCTCATTGAGCACATGAAAATCTCATATCACTCAGTCCATCAGCCTAAATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACACCTTACTGGTCCATTGCCGAAAGGAAATTGTTCTGAGCACTTTTCTGAACATGGTTGTCCACTTTGCTTAAAATTATTTGATAGCCCCACAGCTCTTATCGAGCATAAAGAGATATGTTATCTATCTGCACCCACTCCTCTGGGAACAGAGCCGTTGACCTATATAAGATCCCTGATGCATCGTCCAGATTCTTCTGATGAAAACCACACTGGAAGGCACCCTGAAGCAATTGCAATTGATTGTGAAATGGTTGGTGGTGGAAGTGATGGAACAATAGATCTTTGTGCTAGAGTGTGCATGGTTGATGAAGATGAGAATTTAATGTTCCACACCTATGTGCAGCCTCAAATCCCAGTTACTAACTATAGATATGATATTACAGGGTTGACAGAAGAGCATCTCAGAGATGCCATGCCACTTAAGGAAGTTCAAGAAAAGGTATTGGAAATTTTGTACAATGGAGAATCAATTGGCAAAGTTAGATTGGATGGAGGAAAGGCCAAGCTTCTTGTGGGGCATGATCTAGAACATGATTTGGACTGTCTCAATTTGACTTATCCTGATCATATGTTGAGGGACACTGCAAAGTATCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTTAAGTACCTTACTCGAACATATTTAGGTTATGACATCCAGACAGACATACATGACCCTTTTGAAGACTGTGTTTCCGTGATGAGGTTGTACAAGAGAATTCGAGGCCAAGTTCATACGGAGGAAAACTTCAGAGCATTTACTCCAAGTAGCGTCACCGGCAATTCTGATTCTTGGAATTCCAAGGAACTTGAGAACTCTACACCAGACGAACTCTTTGCCATGTCAAAGTCAGACTATAAGTGCTGGTGTTCAGATTCGATGTAG 1527 0.4329 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGELLAERERHSYDPIARFHFTVTEFLTFPLLGLIKFHVVLVSSIRSIVLQSVIVVLNGMDTQADLPQTPAKRHKCAACYRQYKKREHLIEHMKISYHSVHQPKCGVCQKHCKSFESLREHLTGPLPKGNCSEHFSEHGCPLCLKLFDSPTALIEHKEICYLSAPTPLGTEPLTYIRSLMHRPDSSDENHTGRHPEAIAIDCEMVGGGSDGTIDLCARVCMVDEDENLMFHTYVQPQIPVTNYRYDITGLTEEHLRDAMPLKEVQEKVLEILYNGESIGKVRLDGGKAKLLVGHDLEHDLDCLNLTYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQTDIHDPFEDCVSVMRLYKRIRGQVHTEENFRAFTPSSVTGNSDSWNSKELENSTPDELFAMSKSDYKCWCSDSM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1929 508 ProSitePatterns Zinc finger C2H2 type domain signature. 166 188 IPR013087 -
Alju01g1929 508 SMART exoiiiendus 286 460 IPR013520 -
Alju01g1929 508 Gene3D - 1 93 - -
Alju01g1929 508 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723
Alju01g1929 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 193 IPR013087 -
Alju01g1929 508 CDD REX4_like 288 452 IPR037431 GO:0006364|GO:0008408
Alju01g1929 508 SUPERFAMILY Ribonuclease H-like 288 455 IPR012337 -
Alju01g1929 508 SMART Sm3 5 72 IPR001163 -
Alju01g1929 508 Gene3D - 283 467 IPR036397 GO:0003676
Alju01g1929 508 Gene3D Classic Zinc Finger 148 214 - -
Alju01g1929 508 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 167 459 IPR047021 GO:0004527
Alju01g1929 508 Pfam LSM domain 7 71 IPR001163 -
Alju01g1929 508 SUPERFAMILY Sm-like ribonucleoproteins 3 93 IPR010920 -
Alju01g1929 508 Pfam Exonuclease 288 451 IPR013520 -
Alju01g1929 508 CDD LSm2 2 90 IPR016654 GO:0006397
Alju01g1929 508 FunFam U6 snRNA-associated Sm-like protein LSm2 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1929 Alju-ChrAlju01 15872917 15883891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1929 150 508 C2H2 Transcription Factor Family AT3G27970 52.646 3.97e-140 406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1929 01 15872917 15883891 Alju01g1929 01 15872917 15883891 ECH