Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1908 ATGAATGGTGAAGAGAGGCGCAGAGATTTAAAAAGAAAGTTCCCACATGTGGACCGGTTGCAAGATCATGGATCTTATGATAGACTTCCTACTGGTTGGTTGGGCTGCCCAGCATATGGTCAAGAAATAGGATGCATAATCCCTTCAAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTCCAAGTCAAAAATATTCTCCTAAGCAAGCTATTTTTCAACTAAGACATTTAGGTAGAGAAATTGGTCTAGTGATTGATCTGACAAATACTACTCGTTACTACCCAATATCAGATTGGACCAAAGAAAGGATTCGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTGCCTGATGATGAATCTGTGAACAGATTTTGCAATGAAGTCCAGGGTTTTCTCTCCCAAAGAACAAACACAAACAAATATATACTTGTGCATTGCACTCATGGACACAATCGCACTGGTTATATGATTGTTCATTTTCTTGTGCGAACAGAATCAATTTCAGTCACTGAGGCAATAAATAAATTTGCTACGGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCCTTGTACATGTTTTATCGTGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTTCTGATCCTGAGTTTCAATGTGCAGTTGACTTAGCTGTGGAAAATATTGGAGGTGTTCCTTTGCATGAGGATGTCGCAAGGAATGAGGTTTTGACAAACGATGATGTTTTGGGAGATCCTTTACCTTCAAATCAACTGCATTCAATGCGACTAGAGTGTTATCAACTGCTTAAGTTAGGAAAAGGGGGAAGGGGATTGCAGTTTCCTGGATCACATCCTGTTTCCCTCAATAGGGACAATCTACAACTCTTAAGACAGCGGTATTATTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGTTGATCACCTCGGATGGATGTTATTTGATTGACAGAAAATTTCATTTTCGAATGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGCGACTCCTAATGTTTTCTTAA 1074 0.3994 MNGEERRRDLKRKFPHVDRLQDHGSYDRLPTGWLGCPAYGQEIGCIIPSKVPLGESFDDIIPSQKYSPKQAIFQLRHLGREIGLVIDLTNTTRYYPISDWTKERIRHVKIRCKGRDSVPDDESVNRFCNEVQGFLSQRTNTNKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFATARDPGIYKQDYIDALYMFYRERKPEEVVCPQTPEWKRLSDPEFQCAVDLAVENIGGVPLHEDVARNEVLTNDDVLGDPLPSNQLHSMRLECYQLLKLGKGGRGLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITSDGCYLIDRKFHFRMVHMRFPCRYLNGRLLMFS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1908 357 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 217 IPR029021 -
Alju01g1908 357 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 194 IPR000387 GO:0016311|GO:0016791
Alju01g1908 357 Pfam mRNA capping enzyme, catalytic domain 291 348 IPR001339 GO:0004484|GO:0005524|GO:0006370
Alju01g1908 357 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 282 346 - -
Alju01g1908 357 CDD RNA_5'-triphosphatase 32 198 - -
Alju01g1908 357 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Alju01g1908 357 SMART dsp_5 62 202 IPR020422 GO:0006470|GO:0008138
Alju01g1908 357 Pfam Dual specificity phosphatase, catalytic domain 81 201 IPR000340 GO:0008138|GO:0016311
Alju01g1908 357 PANTHER MRNA-CAPPING ENZYME 27 344 - -
Alju01g1908 357 Gene3D DNA ligase/mRNA capping enzyme 243 354 - -
Alju01g1908 357 FunFam mRNA capping enzyme family protein 25 234 - -
Alju01g1908 357 Gene3D Protein tyrosine phosphatase superfamily 5 223 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1908 Alju-ChrAlju01 15663524 15667911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1908 18 348 Protein tyrosine phosphatase (PTP) family AT5G01290 57.396 3.78e-132 390