Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1894 ATGGCGGCTCACTCCTCCTTCGCCGGCCCTTCTGGAGTTCGAGTCGCCGTCGTCGGTGACCGAGGTACCGGCAAATCCAGTTTGATAGCTGCTGCGGCTTCTGAGTCCTTCCCTGACACCGTCCCCCCTGTCCTTCCATCCACCCTGTTACCTGATGATTGGTTCCCTGATCGTCTTCCACTTACTATCATTGACACTTCTTCCAGTTTGGAAAAACGGGGCAAGCGCAATGAAGAACTGAAGCGAGCTGATGTAGTGGTTTTGACATATGCATGTGATGAACCAACGACCATTACTCGTCTTAGTACTTACTGGCTCCATGAACTGAAGGAGTTGGAGGTAAAGGCGCCTGTAGTTGTGGTTGGCTGCAAGCTAGATCTACAGGATGAGAATCAGCAAATAAACTTAGAGAATCTCATGAAGCAGCTCCTACAACAGTTCGGTGACATTGTGACCTGCATGGAATGCTCTGCAGCTACACTATATCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCAGTACTGCATCCAGTGGATCCATTGTTTGATCATGAGAGGCAAGCTTTAACAGATAAATGTTTAAGGGCGCTGAGAAGAATTTTTGTTCTCTGTGATAGAGACATGGATGGTGCCCTCAATGATGCAGAGCTAAATGGATTTCAGGGTAGATGTTTTGACATGCCATTGCAGCCATCTGAAATAATGGAAGTCAGAACACTTATTCAGCAGCAAGCACCTGAAGGGATTAATCAGCATGGTCTTACTTTTCCTGGCTTTGTTTATATAAATAATATGTTCCTGAAGAAAGGGCGTCCTGAGGCAATGTGGGCAGTTCTAAGAAAATTTGGATATAATAATGATTTAAAACTCCGAGATGATTTTCTTCCAGTTCCATCTAACTACGCATCTGATCAGAGAGTGGAGCTGACAAGTGAAGCTGTAGAATTTCTGAATGGTATCTTCCGATTGTTAGATACAGATAGAGACCGAGCCCTACAACCTGCAGAGCTTGATAAGCTATTTTCTACTGCCCCAGAAAGTCCATGGAGTGATGGTCCTTATAAGGATGCTGTTGAGAGAACTGGTGCAGGCTACATGACTCTTGGTGGATTTCTGTCTCAGTGGGCTCTCATGACATTACTTGATCCACCATCTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGCAATCCTGCTGCAGCACTCCGTGTTAGTCGTAGGAGATCGGTAGACCGTAAGAAACAAAAAGCAGAAAGAAATGTGTTCCAGTGCTATGTCTTTGGTCCTAAAAATGCTGGGAAATCTACTTTATTATATTCATTTTTGAGAAGGCCTTTCTCTGATAAATATACTCCGACAATGGTTGAGCAATATGCTGCAAATGTTGTTGAATTAATTGGGGGGACTAGAAAGACTCTTATTTTGCGGGAGATACCTGAGGATGAAGTGAAGAATTTTTTGTCCAATCGGGATTGTTTGGCAGCATCTGATGTTGCTGCTTTTGTATATGACGGTTCAGATGAACATTCGTGGAGAAGAGCCAGAGAATTGCTCGAGGAAGTTTCTAGACAAGGAGAATTAACTGGTCATAGAATTCCTTGCCTTCTCATTGCTGCTAAGGATGACTTAACTCCATACCCAAGGGCATTACAAGATTCAGTTAAGGTTACCGAGGAATTGGGGATAGAGGCACCCATTCGTGTAAGCATGAAATTAGGCGATTCAAGTAACGTGTATGGTAAGATTGTTAGTGCAGCAGAACACCCTCATTTGAACATTCCTGAAACTGATATTGGGAAGAAGAGAAGGCTGTACCATCAGCTTCTTCATCACACTCTTATATTTGCCTCAGTTGGGGCTGCAATGGCAGTTGTTGGTTTAGCAGCTTTCCGGGGACATGCGATAAAGAAAAATTCTACTTAG 1929 0.436 MAAHSSFAGPSGVRVAVVGDRGTGKSSLIAAAASESFPDTVPPVLPSTLLPDDWFPDRLPLTIIDTSSSLEKRGKRNEELKRADVVVLTYACDEPTTITRLSTYWLHELKELEVKAPVVVVGCKLDLQDENQQINLENLMKQLLQQFGDIVTCMECSAATLYQVPEVFYFAQKAVLHPVDPLFDHERQALTDKCLRALRRIFVLCDRDMDGALNDAELNGFQGRCFDMPLQPSEIMEVRTLIQQQAPEGINQHGLTFPGFVYINNMFLKKGRPEAMWAVLRKFGYNNDLKLRDDFLPVPSNYASDQRVELTSEAVEFLNGIFRLLDTDRDRALQPAELDKLFSTAPESPWSDGPYKDAVERTGAGYMTLGGFLSQWALMTLLDPPSSLANLIYIGYSGNPAAALRVSRRRSVDRKKQKAERNVFQCYVFGPKNAGKSTLLYSFLRRPFSDKYTPTMVEQYAANVVELIGGTRKTLILREIPEDEVKNFLSNRDCLAASDVAAFVYDGSDEHSWRRARELLEEVSRQGELTGHRIPCLLIAAKDDLTPYPRALQDSVKVTEELGIEAPIRVSMKLGDSSNVYGKIVSAAEHPHLNIPETDIGKKRRLYHQLLHHTLIFASVGAAMAVVGLAAFRGHAIKKNST 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1894 642 PIRSF Miro 9 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Alju01g1894 642 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Alju01g1894 642 PANTHER RHO FAMILY GTPASE 425 565 IPR003578 GO:0005525|GO:0007264
Alju01g1894 642 Gene3D - 487 588 IPR027417 -
Alju01g1894 642 SUPERFAMILY EF-hand 182 379 IPR011992 -
Alju01g1894 642 FunFam Mitochondrial Rho GTPase 291 481 - -
Alju01g1894 642 CDD Miro2 420 602 - -
Alju01g1894 642 Pfam EF hand associated 229 313 IPR013567 -
Alju01g1894 642 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Alju01g1894 642 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Alju01g1894 642 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Alju01g1894 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 592 IPR027417 -
Alju01g1894 642 FunFam Mitochondrial Rho GTPase 10 180 - -
Alju01g1894 642 SMART rab_sub_5 13 178 - -
Alju01g1894 642 Pfam Ras family 428 553 IPR001806 GO:0003924|GO:0005525
Alju01g1894 642 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Alju01g1894 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 210 IPR027417 -
Alju01g1894 642 Gene3D - 291 481 - -
Alju01g1894 642 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Alju01g1894 642 SMART ras_sub_4 14 178 - -
Alju01g1894 642 Gene3D - 11 180 IPR027417 -
Alju01g1894 642 PRINTS Transforming protein P21 ras signature 114 127 - -
Alju01g1894 642 PRINTS Transforming protein P21 ras signature 153 175 - -
Alju01g1894 642 PRINTS Transforming protein P21 ras signature 13 34 - -
Alju01g1894 642 FunFam Mitochondrial Rho GTPase 488 589 - -
Alju01g1894 642 Pfam EF hand associated 350 418 IPR013566 -
Alju01g1894 642 FunFam Mitochondrial Rho GTPase 185 289 - -
Alju01g1894 642 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Alju01g1894 642 Gene3D - 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1894 Alju-ChrAlju01 15520465 15527292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1894 1 641 EF-hand Containing Proteins AT3G63150 58.346 0.0 805