Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1887 ATGGATCAGCCCCCATCATCTGCTGTTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCGAGGAAGATGGAGCAGATCAACTAACGGCTGATCGTAAAGGGTTGGTTTTCGAAACTCAAAAGCCCCATCAGGATCTTTTGAGTGAAGTTGTGTCGCAAGTCACTATTCTCAGTTCCAGTTTCTCATCGTCTCAGTCGGATCGCCTCGCGGCCAAGCGTGCGGTTCATGTTCTCTGTGAATTCGCAAAGGATGAGGAACTTGTGAGTAGTATAGTGGGCTGTGGAGCTGTTCCTGCTTTGTTAAGACATCTGAAAGCACCAGAAACAGTTAGAGAAGGTGACGGTGGTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTCGTCCTCGGGCTTCTTGCTGTTAAACCAGAGCATCAACAATTCATTGTTGATGCTGGAGCTCTGCCCTGTCTTATGGATTTGTTAAAGAGGCACAAGACCCATGTCAGTTCACGGGCACTTACTGGTCTTATAAGGAGAGCAGCTGATGCCATCTCAAACCTTGCGCACGAAAACAACACCATTAAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTCGTTGAATTGCTCAAATATGATGATGCAAAGGTACAAAGGGCATCTGCAGGGGCCTTACGAACTCTTGCATTTAAAAATGATGAGAACAAAACCCAGATAGTTGGATGCAATGCACTGCCTACCCTTGTACTAATGCTAGGATCAGAGGATGCTGCAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTTCACTCTTCTCCAAACATAAAGAGGGAAGTTCTTCAAGCTGGTGCTCTACAACCTGTAATTGGATTACTTAGATCTTGCTGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTCGCTGCAACGGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCAGCCACTGATCGACATACTCAAGTCTCCAGATGCACAGCTTCGGGAAATGTCAGCTTTTGCACTTGGGAGACTGGCTCAGGACACACATAATCAAGCTGGTATTGCCTATCATGGAGGTATAGAGCCTCTACTCAACCTTCTTTGCTCTAAGAATGGACCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGTTGATAATGAGGAGAACATTGCGGACATTGTTAAGCTTGGTGGTGTTCAAAAACTACGCGATGGAGATTTCAAAATTCAACCTACCAGGGAATGTGTAGAAAAAACAATGAAAAGGTTAGAGGAGAAAATGCATGGAAGAGTGCTGGAACAACTTTTGTACCTTATGCGTTTTGGAGAAAAGGCTGTTCAAAGACGTGTAGTTCTGGCTCTTGCTCATTTATGTGCTCCTGATGATCGGAAATTTATTTTTGTTGACAACAATGGAATTGAGTTCCTGCTGGATCTTCTAGAATCTACAAATCTCAAACTGAAACGCGATGCTTCAATGGCACTTCACTCGTTGGCCGTCAAAACCACATCTGCCTCTCTGTCGGATGCTGCTCCTCCTGCTCCACCTCCAACTCCTCAGGTATACTTAGGCGAGCAATACGTAAACAATCCTACACTGTCTGATGTCACGTTTTTAGTTGAAGGCAAACGATTCTATGCGCACCGAATTTGTTTACTTGCTTCCTCTGACGCGTTTCGTGCAATGTTTGATGGTGGTTACCGGGAAAGGGAAGCCAAAGATATAGAGATTCCTAACATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAACCATATATATCAATTTGGATGTTGCTCAGGACCTCCTAAGAGCTGCTGATCAGTATCTTTTGGATAGTCTTAAGCGACACTGTGAATATGCAATTGCTCAGGATATTTCGGTCGAAAATATTTCTCTTATGTATGAGTTATCAGAGGCATTCAATGCAATGTCATTGAGGCAATCATGTATACTATTTTTATTGGAGCAATTTGACAAACTGAATGTCAAACCATGGTATTGCCTTATGATGCGTCGCATCATCCCAGCTATACATGAATTTTTCAGAAGCTTGCTTACAAAGCTTGCACAAGCAAAATCGTAA 2133 0.4379 MDQPPSSAVRRSLKRKLEQEFEEDGADQLTADRKGLVFETQKPHQDLLSEVVSQVTILSSSFSSSQSDRLAAKRAVHVLCEFAKDEELVSSIVGCGAVPALLRHLKAPETVREGDGGPKPYEHEVEKGCAFVLGLLAVKPEHQQFIVDAGALPCLMDLLKRHKTHVSSRALTGLIRRAADAISNLAHENNTIKTRVRMEGGIPPLVELLKYDDAKVQRASAGALRTLAFKNDENKTQIVGCNALPTLVLMLGSEDAAIHSEAVGVIGNLVHSSPNIKREVLQAGALQPVIGLLRSCCSESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDILKSPDAQLREMSAFALGRLAQDTHNQAGIAYHGGIEPLLNLLCSKNGPLQHNAAFALYGLVDNEENIADIVKLGGVQKLRDGDFKIQPTRECVEKTMKRLEEKMHGRVLEQLLYLMRFGEKAVQRRVVLALAHLCAPDDRKFIFVDNNGIEFLLDLLESTNLKLKRDASMALHSLAVKTTSASLSDAAPPAPPPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTIYINLDVAQDLLRAADQYLLDSLKRHCEYAIAQDISVENISLMYELSEAFNAMSLRQSCILFLLEQFDKLNVKPWYCLMMRRIIPAIHEFFRSLLTKLAQAKS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1887 710 MobiDBLite consensus disorder prediction 9 28 - -
Alju01g1887 710 SUPERFAMILY ARM repeat 175 512 IPR016024 -
Alju01g1887 710 Gene3D Potassium Channel Kv1.1; Chain A 526 671 IPR011333 -
Alju01g1887 710 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Alju01g1887 710 Gene3D - 175 299 IPR011989 -
Alju01g1887 710 Gene3D - 44 174 IPR011989 -
Alju01g1887 710 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Alju01g1887 710 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Alju01g1887 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 200 IPR000225 GO:0005515
Alju01g1887 710 Gene3D - 300 522 IPR011989 -
Alju01g1887 710 SUPERFAMILY POZ domain 536 639 IPR011333 -
Alju01g1887 710 SUPERFAMILY ARM repeat 62 162 IPR016024 -
Alju01g1887 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Alju01g1887 710 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
Alju01g1887 710 SMART BTB_4 545 642 IPR000210 GO:0005515
Alju01g1887 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Alju01g1887 710 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 706 IPR044282 -
Alju01g1887 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 189 229 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 85 138 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 315 355 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 139 187 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 273 313 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 356 396 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 471 511 IPR000225 GO:0005515
Alju01g1887 710 SMART arm_5 231 271 IPR000225 GO:0005515
Alju01g1887 710 MobiDBLite consensus disorder prediction 1 28 - -
Alju01g1887 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1887 Alju-ChrAlju01 15454674 15460002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1887 293 513 U-box Gene Family AT2G23140 25.764 3.26e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju01g1887 BTB 5e-27 CL0033