Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1852 ATGGCAGAGAGCATAGCAAAAGGAATAAGAGCGTGGACAATTACGAAGAGGAGGGGAGCTAAGAAAAGAGAAGAGATGCTACTATTAGTTGAGCACATGGGAGGCCCATTCTTTTGAGTCTTCTATACTCGTGTGTCGTGTTCCCTTTTTGACTCTCAGGTGCAGTGTAACCCCTGTAACTACCCGAGAAGCCTTGTTGCTTTACTTTCTCTTGATATTTTGAATTTTCAGATAGTTTTCAAGTTGTTCCTCGCCCCGGAAAGTCACAAGTGCACAAGAATACTTTTCAGTTTTCATCTGGGAAGAAAGCCTAGGTTTGCAGATTGGTTGATAAAGAAGAAATGGCGCTCTATAAATAATCATCAGAGGGTGGAGAGATTCCCGTTCACAATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCCCTGCTTGTAAGGCACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTAATCTCTAGAGTACGAAATCCCTTTATAGTTGAATATAAAGATTCTTGGGTAGAAAAGGGTTGTTTCGTGTGCATTGTCATAGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAGAAGGCTAGTGGTGTTCATTTTCCGGAAGAGAAACTTTGTAAATGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAACCATATCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACTAAAGATCAAGACATACGACTAGGTGATTTTGGCCTGGCTAAATTACTGACATCTGATGATCTTGCTTCCTCTGTTGTTGGGACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGTTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCCCTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTACGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTGAAACTAAACAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCTGAGTCAAACTACGTAAGGAGAACTCGGTTTGTGGAGCCAGATTCTGTCTCCACCCTTTCCGATAGGGGTAAACGCTTGTCATTCAGCAATGACAGCAGGGCCTTGAATCCTAGTGTTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGGTCATAGATATTCCACTTGTTCAAGGGAGAAACTCTATGAACTATCTGTTGGTTGCGTCCGTGAAGACTGCATAGCTAACAAATCAAAAGTCACAAAGTTCTCAACTGTCGATAGTAATACTCCAAGATTGAGAACAGTCAAGGATTCTGCCACCCCCAGAAAGCAGACAACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGTGATTCATTTCTGGTGTCGCATACTCCCGCAGGAAATTCTTCCCCACCATCACGTAGAGCATCCCTTCCGCTGCCGACAAGAGTCATGGCTGCAGAAACCTCTTATAGAGCCAAAGTTGGCCTCCTCCGGACAGTGGAGTCTCCAGATGTTTCTGTTAATGCGCCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTCTGAGGAAGCTATCTTTGCTGTCCCCAGAAGGTCGTCAACATCTGCCATGTGCTCTTCTAGATCACGAGTTGGTGCTGTTTGCTCAATCACAAAGGACAAGTGTACTGTCCAGGTTGTGGACAAGGCCATGGCAGCCCCTGCCAGCGTGAGTGATGCTTGTCCTGAAGCTTCAGGTCCAGGATATGGAAGTGAATGCTCTGAGCATGTCACGGCTGATGTTTTTAGTCGGTCATCTGCAGAGTCACAACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGTGCTGAGGCATTGGAAGGGTTGCTTGAGTTCAGTGCAAGGCTCCTACAACAACAGAGGTTTGAAGAACTTGGAGTGTTGTTGAAGCCATTTGGACCAGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACCAAGAGTTTTAAAGAAGCTGTGGTCTAA 2247 0.4428 MAESIAKGIRAWTITKRRGAKKREEMLLLVEHMGGPFFXVFYTRVSCSLFDSQVQCNPCNYPRSLVALLSLDILNFQIVFKLFLAPESHKCTRILFSFHLGRKPRFADWLIKKKWRSINNHQRVERFPFTMEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKASGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPDSVSTLSDRGKRLSFSNDSRALNPSVSGTEKDSQCSTQNGHRYSTCSREKLYELSVGCVREDCIANKSKVTKFSTVDSNTPRLRTVKDSATPRKQTTPSKIFHAGSKRDSFLVSHTPAGNSSPPSRRASLPLPTRVMAAETSYRAKVGLLRTVESPDVSVNAPRIDKIAEFPLASSEEAIFAVPRRSSTSAMCSSRSRVGAVCSITKDKCTVQVVDKAMAAPASVSDACPEASGPGYGSECSEHVTADVFSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKEAVV 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1852 748 Gene3D Phosphorylase Kinase; domain 1 113 213 - -
Alju01g1852 748 FunFam Serine/threonine-protein kinase Nek3 216 463 - -
Alju01g1852 748 Gene3D Transferase(Phosphotransferase) domain 1 214 401 - -
Alju01g1852 748 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Alju01g1852 748 Pfam Protein kinase domain 134 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g1852 748 SUPERFAMILY Protein kinase-like (PK-like) 131 453 IPR011009 -
Alju01g1852 748 CDD STKc_Nek 133 388 - -
Alju01g1852 748 FunFam Serine/threonine-protein kinase Nek2 131 213 - -
Alju01g1852 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Alju01g1852 748 ProSiteProfiles Protein kinase domain profile. 134 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g1852 748 MobiDBLite consensus disorder prediction 440 465 - -
Alju01g1852 748 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 131 704 - -
Alju01g1852 748 SMART serkin_6 134 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1852 Alju-ChrAlju01 15122529 15130060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1852 140 389 MAP Kinase Kinase Kinase AT1G53570 31.373 1.88e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Alju01g1852 Pkinase 9.6e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1852 01 15122529 15130060 Alju01g1852 01 15122529 15130060 ECH