LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1834	ATGCTCTGGGAACACGAGTCTCTGAGTCAGTCAGAGACTCATAGTGGACATGAAGACGTGTCGCCCACCACGCTCGCCACCTGCGGTGCTCTGTTTCTGGGTATAAAACAGAGACAGCCAAACTCATATCAGAATCACAGAACTCATCGAGTCTTGACGATGAATTCTCCTTATACAATAAAAGAAGAGCACTTGGAACCATCTTCATCTGAAGTAGGAGGTGAGCTGGCAATGGTTCTACCTCCACAGCCAATGCAGGGACTTCATGAAACAGGACCACCTCCATTTCTCACCAAGACATTTGATATGGTGGACGACCCTTCAACCGATCACATAGTCTCGTGGAGCAGAGGAGGAAAAAGTTTTATTGTTTGGGATCCATGTTCTTTGTCTACCAATCTCCTTCCCGGATTCTTCAAGCACAACAATTTCTCAAGCTTTGTTAGACAATTGAACACCTACGGTTTTAGAAAAATTGATCCAGACAGATGGGAGTTTTCAAACGAAGAATTCATAAGAGGACACAAGCATCTACTGAGGAACATACGAAGAAGGAGAGCACCTTCTCATCATGTTATTCCATCTTCCCAAACACAAGGTCATTGTGTTGAAGTTGGTGGGTTTGGAGTAGAAGAAGAAATTCTACGTTTAAGGCGCGACAAGCAAGTATTAATGGCGGAGCTTGTGAAGCTTAGACAGCAACAACAGAACACCAGAGCCTACCTTCAGGCGATGGAACAGAGGTTACGAGGAACAGAAATAAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCATTGAAAAATCCAGACTTTCTCCACCAACTACTCCAACAGAATAACAGAAAGGAACTAGAAGAAGCCATGAGTAAGAAAAGAAGGAGGTCAATTGAGCAAGGACCAATTGATGTTGCTGAATCAAGCAGTGAAAGTGAGGGAAGGAATCATGTTAAAGTTGAAGTGTCTGAACTTGAAGTTTTAGCGATGGAAATGCAAGGTCTTGGTAGGGGTAAGAGAGAACAAGAAGCACCTGAATCGCCAGAGAGGCTGGACAATGCACTTGATGAAGGATTTTGGGAAGAGTTGTTTAGTGAAAATGTTGAGGGTGAACTAGATATTCCAAGCAATGAAGGTGAAAATGAAGATGAACACGTGGTAGATAAGAACGTCTTGGCCAAGCGCTTAGGTTACATGGGTTCAAGTCCCAAGTGA	1212	0.4356	MLWEHESLSQSETHSGHEDVSPTTLATCGALFLGIKQRQPNSYQNHRTHRVLTMNSPYTIKEEHLEPSSSEVGGELAMVLPPQPMQGLHETGPPPFLTKTFDMVDDPSTDHIVSWSRGGKSFIVWDPCSLSTNLLPGFFKHNNFSSFVRQLNTYGFRKIDPDRWEFSNEEFIRGHKHLLRNIRRRRAPSHHVIPSSQTQGHCVEVGGFGVEEEILRLRRDKQVLMAELVKLRQQQQNTRAYLQAMEQRLRGTEIKQQQMMAFLARALKNPDFLHQLLQQNNRKELEEAMSKKRRRSIEQGPIDVAESSSESEGRNHVKVEVSELEVLAMEMQGLGRGKREQEAPESPERLDNALDEGFWEELFSENVEGELDIPSNEGENEDEHVVDKNVLAKRLGYMGSSPK	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1834	403	ProSitePatterns	HSF-type DNA-binding domain signature.	135	159	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g1834	403	PRINTS	Heat shock factor (HSF) domain signature	134	146	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g1834	403	PRINTS	Heat shock factor (HSF) domain signature	96	119	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g1834	403	PRINTS	Heat shock factor (HSF) domain signature	147	159	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g1834	403	SUPERFAMILY	"Winged helix" DNA-binding domain	92	185	IPR036390	-
	Alju01g1834	403	MobiDBLite	consensus disorder prediction	1	22	-	-
	Alju01g1834	403	Gene3D	-	88	186	IPR036388	-
	Alju01g1834	403	MobiDBLite	consensus disorder prediction	286	316	-	-
	Alju01g1834	403	MobiDBLite	consensus disorder prediction	286	300	-	-
	Alju01g1834	403	FunFam	Heat shock transcription factor 1	89	186	-	-
	Alju01g1834	403	Pfam	HSF-type DNA-binding	96	185	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g1834	403	Coils	Coil	214	248	-	-
	Alju01g1834	403	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	82	320	IPR027725	-
	Alju01g1834	403	SMART	hsfneu3	92	185	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1834	Alju-ChrAlju01	14936225	14938684	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g1834	82	401	HSF	AT3G22830	49.319	8.30e-112	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Alju01g1834		HSF_DNA-bind	6.5e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju01g1834	01	14936225	14938684	Alju03g2864	03	54206923	54208712	CCT