Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1799 ATGGCCGTCGACGCCCTTCAGCTTCCTCGCGATTCTCTCCCCGATCAATCCCCTCTCCCGCCCAAGTCCCTCCGTTTCGCCGCTTCCCCCTCTAAGGAGGCGCATTTTAGAGGCGTCCGTAAGCGTCCCTGGGGCCGATTCGCAGCCGAGATCCGCGATCCCTGGAAGAAGACTCGCAAATGGCTTGGCACCTTTGATACCGCTGAGGAGGCTGCTCGGGCCTACGACGAGGCTGCCAGGAGTCTTCGTGGACCCAGGGCTAAGACTAACTTCGTTTATGCCGCTGTTCCCTTCGCTCCCTTGGTTCCGATGCCGCCGACCAAATCCTCTGTTTCTTCTGGCGGTGATCGTGATCGGGATCGTGGAGAGATATTCAGTAGGCGCGTGGAGTCTTGGAGGGCTCCGGTGTATTATGCGGCGGACGCCACCGCAGGAGTGCCGGTTAGATCGGAGTACAAGGGATATAAGTTGGAGAATGTGGACGTGGTGGTGAGCGAGAAGAGAAACATGCGGACAGAGAAGAAACCGTTGATGATCGATCTTAACCAACCACCGCCACTGTTCTAA 567 0.5767 MAVDALQLPRDSLPDQSPLPPKSLRFAASPSKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARSLRGPRAKTNFVYAAVPFAPLVPMPPTKSSVSSGGDRDRDRGEIFSRRVESWRAPVYYAADATAGVPVRSEYKGYKLENVDVVVSEKRNMRTEKKPLMIDLNQPPPLF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1799 188 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 MobiDBLite consensus disorder prediction 1 32 - -
Alju01g1799 188 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Alju01g1799 188 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Alju01g1799 188 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Alju01g1799 188 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Alju01g1799 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1799 Alju-ChrAlju01 14612748 14613314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1799 32 187 AP2-EREBP Transcription Factor Family AT5G44210 40.000 1.46e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g1799 AP2 4.3e-14 CL0081