LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1761	ATGAATTGGCTGCTCCATATAAATGTCAGGGTCAAGCCAGTTATGGATGAGCACAAAACAGTTATGGAACAGTCGCCAAAGAAAACGGCAAAGGAGGATGAACCAAAAGAAAGTAAATACAGAGGAGTACGGAGGCGGCCGTGGGGGAAATTCGCGGCCGAGATTCGAGATTCGAACCGGCACGGCGCTCGATTGTGGCTAGGCACTTTCAACACGGCGGAAGAAGCGGCGAGAGCCTACGATCGGGCTGCTTTTGGGATGAGAGGGCCTTCCGCGATTCTCAACTTCCCGGAAGAATATGGTCTGAGCAATGTGGGGAGTGGAAGTTGCAGCAGGAGCCACCTGCATCGGTCTTCGTCGTCGTCTGCTTCGTCGTCTTCAGTGGCGGCGGAAGCTCAGGGAGGAAGACAGGTGTTTGAGTTCGAGTGTTTCGATGATCAATTGCTGGAGGATCTTCTTGATTATGCGACCAAGAAGGAGCAAGAGTAA	489	0.5235	MNWLLHINVRVKPVMDEHKTVMEQSPKKTAKEDEPKESKYRGVRRRPWGKFAAEIRDSNRHGARLWLGTFNTAEEAARAYDRAAFGMRGPSAILNFPEEYGLSNVGSGSCSRSHLHRSSSSSASSSSVAAEAQGGRQVFEFECFDDQLLEDLLDYATKKEQE	162

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1761	162	PANTHER	DNA-BINDING DOMAIN	24	152	IPR044808	GO:0003700\|GO:0009873
	Alju01g1761	162	FunFam	Ethylene-responsive transcription factor 2	38	98	-	-
	Alju01g1761	162	MobiDBLite	consensus disorder prediction	18	42	-	-
	Alju01g1761	162	Gene3D	AP2/ERF domain	38	98	IPR036955	GO:0003700\|GO:0006355
	Alju01g1761	162	Pfam	AP2 domain	38	89	IPR001471	GO:0003700\|GO:0006355
	Alju01g1761	162	SUPERFAMILY	DNA-binding domain	38	98	IPR016177	GO:0003677
	Alju01g1761	162	SMART	rav1_2	39	103	IPR001471	GO:0003700\|GO:0006355
	Alju01g1761	162	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355
	Alju01g1761	162	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Alju01g1761	162	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Alju01g1761	162	ProSiteProfiles	AP2/ERF domain profile.	39	97	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1761	Alju-ChrAlju01	14261511	14261999	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g1761	36	159	AP2-EREBP Transcription Factor Family	AT3G23230	60.484	1.58e-41	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju01g1761		AP2	2.5e-16	CL0081