Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1757 ATGTCATCGCCGTCAACGCAGCAGCCATTCCCAGATTGGGAGTTTTGGCAGGAGACCTCTGATCCTTTCTTGGTCTCTTCATCAAAAGATCAAGTTCGTGGAGACACTTTTCATGATTATCTTTGCTTCGATATGGTTGACAGGGAAGCAAATCAAGTGCCTGTGAGTTGGGAAGCCATGGAAGCAAAGAAGACTGTGGAGGACAAAACATACATAGGGGTGAGAAAGAGACCTTGGGGGAAATTTGCAGCAGAGATCAGAGACACCACCAGGAATGGGACCAGAGTTTGGCTGGGAACGTTCGAGAGTGCGGAGGAGGCTGCTTTAGCTTATGACCAAGCTGCATTCGCCATGAGAGGCAACAACGCTGTTCTTAATTTTCCAGTCCAAAAGGTGAAGGAGTCTCTACAACACATCATGTATGGTTGCCGCAAAGGCTGTTCGCCTGCTTTAGCACTCAAAGAGAGGCACTACATCCAAAGAAAACTATCCTCAAATGCTAAGAAAGGCAAAGCCAAACAGCAATCATCAGAGGTGGTGGTGCTTGAGGACTTAGGTGTTGAATATCTGGAGCAACTTCTCAACATATCTGATCAGACTAAAAGCTAG 609 0.4663 MSSPSTQQPFPDWEFWQETSDPFLVSSSKDQVRGDTFHDYLCFDMVDREANQVPVSWEAMEAKKTVEDKTYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFESAEEAALAYDQAAFAMRGNNAVLNFPVQKVKESLQHIMYGCRKGCSPALALKERHYIQRKLSSNAKKGKAKQQSSEVVVLEDLGVEYLEQLLNISDQTKS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1757 202 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Alju01g1757 202 PANTHER DNA-BINDING DOMAIN 54 195 IPR044808 GO:0003700|GO:0009873
Alju01g1757 202 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Alju01g1757 202 CDD AP2 71 130 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Alju01g1757 202 FunFam Ethylene-responsive transcription factor 2 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1757 Alju-ChrAlju01 14157602 14158210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1757 46 200 AP2-EREBP Transcription Factor Family AT3G23240 52.201 1.96e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g1757 AP2 1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1757 01 14157602 14158210 Alju03g2807 03 53721513 53722319 CCT
Alju01g1757 01 14157602 14158210 Alju01g1757 01 14157602 14158210 ECH