Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1756 ATGAAGGGCGTCATCAATGTCCTGCTGGGACGACCTCCTTCTCTTCAACGACAACAACAACAACAACAACTTCTTCTCCATGTCTTCCGATGTTGTAGCCTCAGCTCCAAGGATTCATCATCGTCGGAGTCCAATTCTTCGGCCTCGGAGGCAGTGCAAGAAGTCTCCTCCTGCTCCAAAGTGGAAGAGAAAGAAGAGAAGAGGGTGTACAGAGGAGTGAGGAGGCGGCCGTGGGCGAAATACGCGGCGGAGATAAGGGACTCCACCAGAAAAGGGGTGAGAGTGTGGATCGGAACATTCGAGACGGCAGAGGAGGCAGCCTTGGCGTACGATCAGGCGGCATTGTCGACACGAGGGTCTCTGGCAGTTCTCAACTTCCCGGAGGAGCTGGTGAGAGAATCTCTGAGGAAGATGCTTCACAAGACATGGCAAGATGCTTGCTCTCCGGTGTTGGCCCTCAAGAAGAAACACACCTCCACACGAAAGTCAAAGTCAAAGTCGACGACTCTTCCTCATCTTGCTCAAACCCATCAGCCAGTGTTGGGGCTGGAGGATTTGGGATCCGACTAG 570 0.5351 MKGVINVLLGRPPSLQRQQQQQQLLLHVFRCCSLSSKDSSSSESNSSASEAVQEVSSCSKVEEKEEKRVYRGVRRRPWAKYAAEIRDSTRKGVRVWIGTFETAEEAALAYDQAALSTRGSLAVLNFPEELVRESLRKMLHKTWQDACSPVLALKKKHTSTRKSKSKSTTLPHLAQTHQPVLGLEDLGSD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1756 189 MobiDBLite consensus disorder prediction 154 189 - -
Alju01g1756 189 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Alju01g1756 189 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Alju01g1756 189 MobiDBLite consensus disorder prediction 37 56 - -
Alju01g1756 189 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Alju01g1756 189 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Alju01g1756 189 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Alju01g1756 189 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Alju01g1756 189 PANTHER DNA-BINDING DOMAIN 40 158 IPR044808 GO:0003700|GO:0009873
Alju01g1756 189 MobiDBLite consensus disorder prediction 37 66 - -
Alju01g1756 189 FunFam Ethylene-responsive transcription factor 2 68 128 - -
Alju01g1756 189 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Alju01g1756 189 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1756 Alju-ChrAlju01 14144079 14145017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1756 61 187 AP2-EREBP Transcription Factor Family AT3G23240 56.154 8.24e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g1756 AP2 3.4e-13 CL0081