Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1705 ATGTCTGGAGCACTGTCTTCATCCCTGCCCGTCCACCCAACACCCATAGAAGAGACATATTCCAAGATACCAGATTCTCAACAGGCTTTTGTGGAAAAAGAGCGCTTGGCAAGACCTCTCACTCATTCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACATGTTTTCGTCATCCCCTGGATTTTCTACTGATCTCCATCACTCATCCCTTTCACCTCATGGAAAACACTCAAGAAATCTGCATTTTATTTCACAGTCTTCAAGTAACATGGCATCATTGCCATTGTCATATTCTTCAAGTACTGGACCACTGCCTTCTACTACATCAAGTTGTTATTCCAAAGAAAGTAATGGAACCTGGGCTACTGATTCCTTGCCAAACATTCTTGATTTTCCTGTAAATACTTCCATTAAGGATAGTCAAGTAGAAAGCAGTGCCTGCAATATAATGGCACCTGACGAGTATGGTAAGAAAAATGATTGGCAGGAGTGGGCTGACCAACTGATCAATGATGATGATGCGTTGACTTCTAACTGGAATGACATTCTTGTTGACCCCAGCATTCATCATCTTGAACCAAAGGTGTCATGCCAGACTTCAAAATCATCTTTACAATTGCCAGGCCAGCAGCCCCAAGGTCATCAGCAACTTTCAGCTTCATCAGGAGAAAAACATGGTAGTGCTCCACCCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACAAACTTGGTGGGAGTGAAAGAGCAACCCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGAAAACTTAACAATATATCACGTTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGATCCTCAGAGAAAAAGTTAACTCCAATTGAAGAGATGTCATCTCTAGACTTGAAAACCGGTATTGAGATCACTGAAGCTCTGAGACTGCAGATGGAGGTTCAGAAGCGCCTACATGAACAACTAGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGCAACAATGCAAATCTGGCGTTGAAAAGTTTAAGGCAGCATCATCTGCCATTGAGGATCCCTCTGGAGTGTCATCAGATGCTATTAAAGATTCTTCTGCCAAAACTGAAGTGGATGTCTGCCAAGTGAACCATTCCAAGTCAGGAACTGAACAGGATAATAATAGCAATGCCCAGGTTGAAGAAAGCTCACTGGAAGTTGTTGAGAATGATAATGCTCCTGAAAGTCAAACTTCTGATAATCCTAAGCAAGGTGCGAGTGAAGACGATATTAATGCTCAACCATCAAAGCGTCAAAGGATAGACGAATAA 1413 0.4289 MSGALSSSLPVHPTPIEETYSKIPDSQQAFVEKERLARPLTHSSHLNSSGAVGHMFSSSPGFSTDLHHSSLSPHGKHSRNLHFISQSSSNMASLPLSYSSSTGPLPSTTSSCYSKESNGTWATDSLPNILDFPVNTSIKDSQVESSACNIMAPDEYGKKNDWQEWADQLINDDDALTSNWNDILVDPSIHHLEPKVSCQTSKSSLQLPGQQPQGHQQLSASSGEKHGSAPPSSSANSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVENLTIYHVKSHLQKYRTARYRPESSEGSSEKKLTPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEQQCKSGVEKFKAASSAIEDPSGVSSDAIKDSSAKTEVDVCQVNHSKSGTEQDNNSNAQVEESSLEVVENDNAPESQTSDNPKQGASEDDINAQPSKRQRIDE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1705 470 Gene3D - 240 299 - -
Alju01g1705 470 Pfam MYB-CC type transfactor, LHEQLE motif 326 373 IPR025756 -
Alju01g1705 470 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 295 IPR006447 GO:0003677
Alju01g1705 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 217 454 IPR044848 GO:0003700
Alju01g1705 470 MobiDBLite consensus disorder prediction 200 243 - -
Alju01g1705 470 FunFam Myb family transcription factor 240 298 - -
Alju01g1705 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Alju01g1705 470 MobiDBLite consensus disorder prediction 200 240 - -
Alju01g1705 470 SUPERFAMILY Homeodomain-like 239 295 IPR009057 -
Alju01g1705 470 MobiDBLite consensus disorder prediction 383 470 - -
Alju01g1705 470 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Alju01g1705 470 MobiDBLite consensus disorder prediction 386 459 - -
Alju01g1705 470 Coils Coil 329 349 - -
Alju01g1705 470 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1705 Alju-ChrAlju01 13613899 13619035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1705 6 383 G2-like Transcription Factor Family AT4G28610 51.928 2.03e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju01g1705 Myb_DNA-binding 3.6e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1705 01 13613899 13619035 Alju03g2773 03 53473328 53483565 CCT
Alju01g1705 01 13613899 13619035 Alju01g1705 01 13613899 13619035 ECH
Alju01g1705 01 13613899 13619035 Alju03g2773 03 53473328 53483565 ECH