Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1651 ATGGATGATGTTGAATATCCGATGCCCACGGCTTCTGGGTTGCCCCGCCAAAAGAAGACCTCCGTGCCCGAGGACGATATCATGGAGCTCTTGTGGCAAAACGGCCAGGTCGTGATGCAGAGCCAAAATCAACGGCCTCAGAGAAAACCGCCGCCAGAGAGGTACCCCGACAGCGTTATTCCCACCGGATCATCGACGGCGAGGGAGATTCGACCCTCGCAACAATTAGAACAACACTACCAGAATCCACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATCGTAGATGATCCTCCCTTGGATCATAATTTCTGCGCCGACATCCTCTACCCGCAGCCGCCCACTGTCAATAACAGTTCCATGCAAAATCCTGACCGTGCGTCTCAAGCAACGAAACTCCGGCAGCCATCGAGGTCGGTCGCTCCACGGCCGCCAATTCCACCTCCGCGGAAGCCGGAGCAGGTGCAGACGATGATACCGAACTTCGCGCACTTCTCGAAACACAATGTGAGAGTTGAAGCAGGACCGTCAAGTTCGAAGTCGGCGATGAAGGAATCGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGACTTTCAGAAACACGGCGGAGCCAACAGAGCGCGATGAGGCTCCCGGAACGATGAGCACTGCCGGCGCTGCGGCGCCTTCGTCAACGTCCGTCGGCGGAGATACTGGATTCAGGGAGACGACTACGTGCGAGATGATGGCGACGTCATCGCCGGGAGGTTCAAGCGGGGGTGTTGAACCGGCAAGGAGACCACCGGCTGAAGATCGGAAACGGAAGGGTCGGGAAGCCGATGAATCAGAATGCCACAGTGAGGATGTCTATTCTGAATCTGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCTAATAAAAGATCACGTGCTGCAGAGGTTCACAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCGATGATGTTTCCCGGAATCCAACAATATATGCCGACAATGGGGATGGGTATGGGGATGGGGATGGGGATGGGGATGGGTATGGGCATGGAAATGGAAATGGGAATGAATAGGCCATTAATGCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCACCGGCAGCTGCGGCGGCCCAGTTGGGACCAAGGTTCCCTATGGCCCCTTTCCAAATGCCTCATGCCCCTCAGCCTGATTCATCCAGAATGCAAGCAGCAGCTCCTAATCAACCAGAAAATAATACGCTTCCTTCTCTTGTCGCACCTGATCCTAATCAGTCACGGATCCCAAACTTTAATGATCCTTATCAACAATGCCTTGGTCCCCACCACCAGATGCATCTACAGTTCATGCAGAACCAGGTAATGAACAACCCAACTTTCAGCAAATCAAGTACCAGTAAGAGCCATGAAAATGCAGAAAATAATCAACCAGGTCAACCAGAGTAA 1635 0.5174 MDDVEYPMPTASGLPRQKKTSVPEDDIMELLWQNGQVVMQSQNQRPQRKPPPERYPDSVIPTGSSTAREIRPSQQLEQHYQNPHIFMQEDEMISWLHYPIVDDPPLDHNFCADILYPQPPTVNNSSMQNPDRASQATKLRQPSRSVAPRPPIPPPRKPEQVQTMIPNFAHFSKHNVRVEAGPSSSKSAMKESTVVDSCDTPALMASASRVSETFRNTAEPTERDEAPGTMSTAGAAAPSSTSVGGDTGFRETTTCEMMATSSPGGSSGGVEPARRPPAEDRKRKGREADESECHSEDVYSESAEAKKQNCGSSSNKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTMGMGMGMGMGMGMGMGMEMEMGMNRPLMPFPNMLAASAMPPAAAAAQLGPRFPMAPFQMPHAPQPDSSRMQAAAPNQPENNTLPSLVAPDPNQSRIPNFNDPYQQCLGPHHQMHLQFMQNQVMNNPTFSKSSTSKSHENAENNQPGQPE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1651 544 MobiDBLite consensus disorder prediction 146 160 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 464 493 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 305 320 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 274 303 - -
Alju01g1651 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 385 IPR036638 GO:0046983
Alju01g1651 544 MobiDBLite consensus disorder prediction 449 493 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 121 142 - -
Alju01g1651 544 Pfam Helix-loop-helix DNA-binding domain 323 369 IPR011598 GO:0046983
Alju01g1651 544 MobiDBLite consensus disorder prediction 1 21 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 233 267 - -
Alju01g1651 544 PANTHER TRANSCRIPTION FACTOR PIF3 16 482 IPR044273 GO:0003700|GO:0006355
Alju01g1651 544 SMART finulus 325 374 IPR011598 GO:0046983
Alju01g1651 544 MobiDBLite consensus disorder prediction 121 160 - -
Alju01g1651 544 MobiDBLite consensus disorder prediction 518 544 - -
Alju01g1651 544 Gene3D - 314 377 IPR036638 GO:0046983
Alju01g1651 544 MobiDBLite consensus disorder prediction 209 327 - -
Alju01g1651 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Alju01g1651 544 MobiDBLite consensus disorder prediction 35 71 - -
Alju01g1651 544 CDD bHLH_AtPIF_like 319 382 IPR047265 -
Alju01g1651 544 FunFam Basic helix-loop-helix transcription factor 314 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1651 Alju-ChrAlju01 13255018 13258807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1651 14 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.011 2.32e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g1651 HLH 2e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1651 01 13255018 13258807 Alju01g1651 01 13255018 13258807 ECH