Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1630 ATGGCTTCCTTCTCTGGAATCCGCCGCCTTATTCGCGATTCATCTTCTTACTCGTCGATTCTTTATTCGCAACTTACTTCGATTCGTCTTAGTTCAACCCTCACGTCCCCCAGGCTTTTCGTCAGTGGTCTATCAAGACTGACGACAGATGAAAAACTAAAGGAAGCATTTGCTCCTTTTGGGCAGCTGGTTGAAGCTAAGGTCATAACTGATAGAATCTCTGGAAGATCAAAGGGATTTGGTTTTGTGACTTATGCGGGCATAGAAGATGCTGAAAAGGCCAAAGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCTAAACCTCTGCAATCACAGCCTCAGCCCTCTGAAACAGGTTTTACAGTTAACAAGACGGTTGGATGGTGTGGTTGA 429 0.4406 MASFSGIRRLIRDSSSYSSILYSQLTSIRLSSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVEAKVITDRISGRSKGFGFVTYAGIEDAEKAKEGMNAKFLDGWVIFVDPAKPREPKPLQSQPQPSETGFTVNKTVGWCG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1630 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Alju01g1630 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Alju01g1630 142 PANTHER NUCLEOLAR PROTEIN 8 20 141 - -
Alju01g1630 142 Gene3D - 22 125 IPR012677 -
Alju01g1630 142 SUPERFAMILY RNA-binding domain, RBD 36 127 IPR035979 GO:0003676
Alju01g1630 142 SMART rrm1_1 38 111 IPR000504 GO:0003723
Alju01g1630 142 FunFam RNA binding protein 24 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1630 Alju-ChrAlju01 13105373 13108069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1630 39 129 Eukaryotic Initiation Factors Gene Family AT3G16380 40.000 1.99e-12 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1630 01 13105373 13108069 Alju01g1630 01 13105373 13108069 ECH