Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1613 ATGAAGAGGGAGAGAGATTGCGAGAGCTTGGACCTGGCCAATTGTCTCATCCTGCTTTCTCATGATCATCAACAAACAAGGGTTGATAGTTCAGAATTTGAGTGCAAGACGTGCAAGCGCAAGTTCTCGTCGTTTCAGGCGCTGGGAGGTCACAGGGCCAGCCACAAGAGGCCCAAGCTGGACGCCCAGGACGACCTCAAAGCAGAGGCCAAATCTCTGAGGTTAGGCAACAAACCCAAGACTCACGAGTGTTCTATTTGTGGGGTTGAGTTCTCCCTCGGCCAAGCACTCGGCGGTCACATGAGAAAGCACAGAGCCGCTCTTCACCAACACACCAACGACCATGTAGTGGACAATATAGTGGCCAAGGTGCCTGTTCTTAAGAGATCCAACAGTACGAGGGTGTTGTGTTTGGACCTCAACTTGACGCCTCTCCAGAATGACTTGAACTTGTTGTGTTCAAACATGGCTCCCGCCTTCACTTGA 486 0.5144 MKRERDCESLDLANCLILLSHDHQQTRVDSSEFECKTCKRKFSSFQALGGHRASHKRPKLDAQDDLKAEAKSLRLGNKPKTHECSICGVEFSLGQALGGHMRKHRAALHQHTNDHVVDNIVAKVPVLKRSNSTRVLCLDLNLTPLQNDLNLLCSNMAPAFT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1613 161 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Alju01g1613 161 Gene3D Classic Zinc Finger 30 104 - -
Alju01g1613 161 SMART c2h2final6 82 104 IPR013087 -
Alju01g1613 161 SMART c2h2final6 33 55 IPR013087 -
Alju01g1613 161 Pfam C2H2-type zinc finger 33 58 - -
Alju01g1613 161 Pfam C2H2-type zinc finger 82 106 - -
Alju01g1613 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Alju01g1613 161 SUPERFAMILY beta-beta-alpha zinc fingers 33 104 IPR036236 -
Alju01g1613 161 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Alju01g1613 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Alju01g1613 161 PANTHER ZINC FINGER PROTEIN ZAT5 4 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1613 Alju-ChrAlju01 12999863 13000348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1613 1 152 C2H2 Transcription Factor Family AT2G37430 45.238 4.71e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1613 zf-C2H2_6 2.4e-10 CL0361