Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1612 ATGAAAAGACAGATACAGAGCCAAAACACAGAGAGCTTAGATCTGGCAATCTCTCTAATGCTTCTCTCTCAACCACAACACAAGCCCTTCAAAGTCTCTCATGAGTTTGAATGCAAAACCTGCAACCGCAAGTTCTCGTCGTTTCAGGCGCTAGGAGGTCACAGAGCCAGCCACAAAAAACCCAAACTTATTTCTGAAGCAGAGTTACAAAAACCCAATTCCCAGAAATCGTTACACGAGTGTTCTATTTGTGGCCAGAGATTCTCTCTGGGACAAGCTTTAGGCGGCCACATGAGAAAGCACAGAGCAGCCATGAACGAAGAAGCCCCTCCTTCCATAAATGAGGTTGTTGCTTCTGGTGTCTCTGTTCTCAAGCGATCTAACAGCAGCAAGAGGGTTATGTGCTTGGACTTGAATTTAACCCCTCTCGAGAATGACTTGAAGTTGCTTTTCGGAAACAAGGCTCCTTCCATTAATCTTTCCTTGTGCTGA 492 0.4533 MKRQIQSQNTESLDLAISLMLLSQPQHKPFKVSHEFECKTCNRKFSSFQALGGHRASHKKPKLISEAELQKPNSQKSLHECSICGQRFSLGQALGGHMRKHRAAMNEEAPPSINEVVASGVSVLKRSNSSKRVMCLDLNLTPLENDLKLLFGNKAPSINLSLC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1612 163 Gene3D Classic Zinc Finger 33 101 - -
Alju01g1612 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Alju01g1612 163 Pfam C2H2-type zinc finger 36 61 - -
Alju01g1612 163 Pfam C2H2-type zinc finger 79 103 - -
Alju01g1612 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Alju01g1612 163 PANTHER ZINC FINGER PROTEIN ZAT5 10 146 - -
Alju01g1612 163 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Alju01g1612 163 SMART c2h2final6 36 58 IPR013087 -
Alju01g1612 163 SMART c2h2final6 79 101 IPR013087 -
Alju01g1612 163 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Alju01g1612 163 SUPERFAMILY beta-beta-alpha zinc fingers 36 101 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1612 Alju-ChrAlju01 12991667 12992158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1612 1 162 C2H2 Transcription Factor Family AT2G37430 50.838 6.16e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1612 zf-C2H2_6 7.4e-10 CL0361