Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g1591 | ATGCTTCTTAGACCAACATTATCGTATCCGGGGCCCGTCAAAGGTTTTCGGTGCCCAAAACACAAAAGATATCGTGAAGGGTCGAATCATTGTTTGTATCGGCGGTCGAAAGGGTTACGATACGAACAGAGAGCAGACTGCATAGCATTCCCTTCCTTCAAACTACAACCTCTAGCAATAATGCCTCGTTACGATGACAAATACGGTAATACCCGTCTATATGTGGGACATTTGTCCTCAAGGACGCGTTCACGTGACCTGGACAAGGTCTTCGGCAGATATGGGAGAATTCGAGGTGTTGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCCCGAGATGCGGATGATGCAAGATATAACTTAGATGGCCGTGATGTGGATGGAAGTCGCATCATTGTCGAATTTGCAAAAGGGGGTCCTCGTGGTTCCCGAGAATACTTGGGTAGAGGTCCTACTCCAGGATCTGGGCGCTGCTTTAACTGTGGCATTGATGGACACTGGGCTCGGGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTACCGCTGTGGTGAAAGAGGTCATATAGAACGAAGCTGCAAGAATAGTCCCAAGAAAGTCAGTGGTCATGGACGAAGTGATTCTCGTTCACCTGTTAGGTCACGTTCTCCTCGTCGTGACAGAAGCCGGGATCGAAGTTACAGCCGGGATCGCAGCTATAGCCGATCAAGATCCCCTGTCCGAAGAGAACGTAGCCCTGTTCGGGAAGATAGATCAGAGTCTCCCCGTTACAGAAGCCCAGGACGCAAGAATAGCCCTCCATCTCCTAAGACAAGGAACGATAGCCCTACTTATAATGAAGGCAATCAACAGAAGGAGAGAGGGGACATATCTCCTGAGAATGGTGGGCTGGCCAACCGGCAAGATGGATCTGACTATAGTGACGGTCCTAGAAGAAGGAGCAGAAGTAGAAGCCCTGATAGTCCCAAAACTAATGGCCGTGGCCACAGTGCTAGTCCTAGAGATGATAGGAGCCCCATTGATGACGATGATGTCACCCGCCATTCCCCTAGGGGCAGCGAGTCACCTTAA | 1080 | 0.4935 | MLLRPTLSYPGPVKGFRCPKHKRYREGSNHCLYRRSKGLRYEQRADCIAFPSFKLQPLAIMPRYDDKYGNTRLYVGHLSSRTRSRDLDKVFGRYGRIRGVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGGPRGSREYLGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERSCKNSPKKVSGHGRSDSRSPVRSRSPRRDRSRDRSYSRDRSYSRSRSPVRRERSPVREDRSESPRYRSPGRKNSPPSPKTRNDSPTYNEGNQQKERGDISPENGGLANRQDGSDYSDGPRRRSRSRSPDSPKTNGRGHSASPRDDRSPIDDDDVTRHSPRGSESP | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g1591 | 359 | MobiDBLite | consensus disorder prediction | 332 | 354 | - | - | |
| Alju01g1591 | 359 | ProSiteProfiles | Zinc finger CCHC-type profile. | 182 | 198 | IPR001878 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | MobiDBLite | consensus disorder prediction | 308 | 325 | - | - | |
| Alju01g1591 | 359 | FunFam | serine/arginine-rich splicing factor RS2Z32-like isoform X1 | 151 | 179 | - | - | |
| Alju01g1591 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 134 | IPR000504 | GO:0003723 | |
| Alju01g1591 | 359 | SMART | c2hcfinal6 | 160 | 176 | IPR001878 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | SMART | c2hcfinal6 | 182 | 198 | IPR001878 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | Gene3D | - | 180 | 226 | - | - | |
| Alju01g1591 | 359 | Gene3D | - | 151 | 179 | - | - | |
| Alju01g1591 | 359 | SMART | rrm1_1 | 72 | 137 | IPR000504 | GO:0003723 | |
| Alju01g1591 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 65 | 160 | IPR035979 | GO:0003676 | |
| Alju01g1591 | 359 | MobiDBLite | consensus disorder prediction | 194 | 261 | - | - | |
| Alju01g1591 | 359 | MobiDBLite | consensus disorder prediction | 194 | 359 | - | - | |
| Alju01g1591 | 359 | FunFam | Serine/arginine-rich splicing factor RS2Z32 | 63 | 146 | - | - | |
| Alju01g1591 | 359 | MobiDBLite | consensus disorder prediction | 262 | 292 | - | - | |
| Alju01g1591 | 359 | Gene3D | - | 61 | 149 | IPR012677 | - | |
| Alju01g1591 | 359 | SUPERFAMILY | Retrovirus zinc finger-like domains | 152 | 199 | IPR036875 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 141 | IPR000504 | GO:0003723 | |
| Alju01g1591 | 359 | Pfam | Zinc knuckle | 181 | 198 | IPR001878 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | Pfam | Zinc knuckle | 160 | 175 | IPR001878 | GO:0003676|GO:0008270 | |
| Alju01g1591 | 359 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 71 | 239 | - | - | |
| Alju01g1591 | 359 | ProSiteProfiles | Zinc finger CCHC-type profile. | 160 | 175 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g1591 | Alju-ChrAlju01 | 12765899 | 12769093 | Wgd |