Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1578 ATGACGAGGGGTGCCCTGATAAGTGTTAATGGTGACGATAAAGAATTACAAGAATTGACTCAGCGTCTACGAATTGGGAAGAAAATCCTGAAAGATGGAGCTATCGGTGAGGAAAATAGATTACATGATAAAAATGAGTTGCAAGTTAATGGAGTAGTTGAAGAATTTAAGGTTGGACAAGGGGAGACGGTGAAAGGCCCTGTTGTCTCGCCTGTAGCAAAGCAACAGACTAAAGGGGGAGTAGTTTGTTGGGAGAGGTTTTTACATCTCAGATCCCTGAAAGTCTTGCTTGTGGAGAATGATAACTCTACTCGCCATGTTGTCACTGCACTGCTTCGCAATTGTTGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCATGGAAGATGTTGGAGGATTTAACTAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTTGCTTATCAGGAATTGGTCTTCTATGCAAGATTATGGGGCACCAAACACGGAAGAACATTCCAGTCATTATGATGTCATCCCATGACTCTATGGGTTTAGTTTTTAAGTGCTTGTCAAACGGTGCTGTTGACTTTCTTGTAAAACCCATAAGGAAGAACGAGCTTAAAAACCTTTGGCAACATGTTTGGAGGCGATGCCATAGTTCTAGTGGAAGCGGGAGTGAAAGTTGCTCTCAAACCCAGAAGTCTGTAAAATCAAAGAGCCTTGAGAAGTCTGGTAACAACACTTACAGCAATGATGAAGACAACAGCACAAGTGAAGATCTGAATAATAGGAATGGAAGTGACAATGGTAGTGGAACTCAGACCTCCTGGACCGAACAAGCTGTTGAAGTAGACAGTTCCAGACAAGTGCCTCAGTGGAATCAAATAGTAGATTATACCGATAGCACCTGCGCTCAATTTGTTCACTCCAATGCTCAAATATGTGATGACAAGATGGTTCCTATGGCCACAAAGTGTTGTCCCAATCATAAGAAACAACTTGATCACTTCAAAGTCAAAGAGCTGAAAGTTGACTCAAGTAGAGAACTTGACCTAATTGTTGACAATGGAAATGAGGTTCCCATCAAAATTTCATTAGAAAAACATGGTATCCATCTTGATGTAGGCTCCTCTAAAGTCAATGGGCAGAATAGTAGAGGACAGTTGGATCTTAATTGTGGGAATCCATCTGTCGAGCTAAGGCCCAATGGTCCTTCGGTGTCTGAACCCATTACTGGTGAAGAATTTGGAGCTCAAAATAAAAGACCCAAGCTCTCAGATAATGAAAATAAAGCTACGAATGATGACAAGTTACCATTTCCTGAGCCCAGTTTAAAGAAACTTAGAGGAGTAGAAGAGGCTGGAATTTTAATTCAGGACAAACAGAATGCTGCAAGATGTTCAGACCTTTCAGCCTTCTCAAGGTACAATGCAAGCTCTAACGCTAAGAAGTCTCCCACTGGATGTGTTGGAACTGGAAGCAACTCTCCGCATAACAATAGCTTAGAAGTTACAAAGAAAGATTTATCATGTGAAATTCAATCTCATTCTAACGGCAATCCTCCCCACCGGAGTTCAAATGGTGCTAGCAATAACATTGATATCGGTTCCTCAGCTAATAATGCTTTTACTAAAATTGAATTTTCAAGGGAACCAGTAGGAGCATCAACAGCCAAATGCCTGTACCATGTATCTGCTGTCCAGCCTATAAGCAACGACCTGTGTACATTTCACCAAGTTGTTTTGCATAATAACAAAGATATGACTACTGTGACAATGCTAGCACCAAAAGGAGGCATACGTAAGGGTTATCCAACTGGGGACTTTCATTGCCAATTTGAAAACCATGACAGTAATGCTGACAAGCAGTACCAACAAAACTGTGTTGATTCAACATTAAAGGAAATGGCTGCTGCTACACCACATTATGGGTCATCTAATGTACTGGAAGTGCTGGTTGATTGTAATACTGGAGATAACAGTGTCAACAGAAGTGCATCGGGCAGCAACAACAGAAGCAATGGGCTAAATGGGAGCAGCACTGCTGTTGGTGACAGAGGGACAAACATAGAGGGTGACAATGGATTTGCAGGAAGTATTGGAAGTGGTGATCCTAGCGGGAATAAGAGTGGGAGCGGGAATGCGAGTGATAACAACGTAGACCAAAACAAGACTTCCAAGAGAGAAGCATCCTTACGTAAGTTTCGCTATAAGAGAAAGGAGAGTTGCATCCATAAACAGGTCCAGCATCAAAGTAGAAAGAAACTAGCTGAACGACGGCCCCACTTTTGTGGACAATTTGTTCACAAGTCCACAAACGAAAATGCACCAGAGGCAGAAGATAACTGA 2340 0.4179 MTRGALISVNGDDKELQELTQRLRIGKKILKDGAIGEENRLHDKNELQVNGVVEEFKVGQGETVKGPVVSPVAKQQTKGGVVCWERFLHLRSLKVLLVENDNSTRHVVTALLRNCCYEVIEAANGLQAWKMLEDLTNHIDLILTEVAMPCLSGIGLLCKIMGHQTRKNIPVIMMSSHDSMGLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCSQTQKSVKSKSLEKSGNNTYSNDEDNSTSEDLNNRNGSDNGSGTQTSWTEQAVEVDSSRQVPQWNQIVDYTDSTCAQFVHSNAQICDDKMVPMATKCCPNHKKQLDHFKVKELKVDSSRELDLIVDNGNEVPIKISLEKHGIHLDVGSSKVNGQNSRGQLDLNCGNPSVELRPNGPSVSEPITGEEFGAQNKRPKLSDNENKATNDDKLPFPEPSLKKLRGVEEAGILIQDKQNAARCSDLSAFSRYNASSNAKKSPTGCVGTGSNSPHNNSLEVTKKDLSCEIQSHSNGNPPHRSSNGASNNIDIGSSANNAFTKIEFSREPVGASTAKCLYHVSAVQPISNDLCTFHQVVLHNNKDMTTVTMLAPKGGIRKGYPTGDFHCQFENHDSNADKQYQQNCVDSTLKEMAAATPHYGSSNVLEVLVDCNTGDNSVNRSASGSNNRSNGLNGSSTAVGDRGTNIEGDNGFAGSIGSGDPSGNKSGSGNASDNNVDQNKTSKREASLRKFRYKRKESCIHKQVQHQSRKKLAERRPHFCGQFVHKSTNENAPEAEDN 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1578 779 SMART REC_2 93 208 IPR001789 GO:0000160
Alju01g1578 779 MobiDBLite consensus disorder prediction 476 530 - -
Alju01g1578 779 Pfam Response regulator receiver domain 95 206 IPR001789 GO:0000160
Alju01g1578 779 MobiDBLite consensus disorder prediction 417 441 - -
Alju01g1578 779 FunFam Two-component response regulator-like PRR37 93 251 - -
Alju01g1578 779 SUPERFAMILY CheY-like 91 217 IPR011006 -
Alju01g1578 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 93 398 IPR045279 GO:0009736
Alju01g1578 779 MobiDBLite consensus disorder prediction 659 779 - -
Alju01g1578 779 MobiDBLite consensus disorder prediction 217 283 - -
Alju01g1578 779 ProSiteProfiles Response regulatory domain profile. 94 212 IPR001789 GO:0000160
Alju01g1578 779 Gene3D - 92 265 - -
Alju01g1578 779 ProSiteProfiles CCT domain profile. 725 767 IPR010402 GO:0005515
Alju01g1578 779 MobiDBLite consensus disorder prediction 698 718 - -
Alju01g1578 779 MobiDBLite consensus disorder prediction 390 441 - -
Alju01g1578 779 MobiDBLite consensus disorder prediction 659 684 - -
Alju01g1578 779 Pfam CCT motif 725 767 IPR010402 GO:0005515
Alju01g1578 779 CDD psREC_PRR 95 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1578 Alju-ChrAlju01 12651824 12658346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1578 81 288 Response Regulator Gene Family AT5G60100 66.512 2.87e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Alju01g1578 Response_reg 1.7e-20 CL0304