Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g1558 | ATGTGCACAGGAACCACGTGGTCGAATCATCTGCCCAGCCGCGAGCTTAAGTACAGAGCCCCGAATGGGGAGAGAGAGAGTACAAAATCTCCAAAGCGAAAGGAGAAAGGTAACTACTCTCCACACCCACCCCGCCATATTTTCTCGCTCCTCCTCCTCCTTCTTGATCTTCCTCCTCTCTCTAGGGTTTCGTTTCCATCCGTTCCTAGGGTTTTTCTTCATCTAATCGATGATGTATTTGTTTCTTTTCTTTGTCGTATTAGGATTCCTGCAACGATGGCGGAAGGTCCGGCCAGTCCCGGCGCGGGTGGTAGCCATGAGGAGAGCGGTGATCAGAGCCCCCGCTTTAATTTCCGAGAGCAAGACAGGTACCTGCCCATCGCCAATATCAGCCGAATCATGAAGAAAGGACTTCCTCCCAATGGAAAAATCGCCAAGGATGCCAAGGAGACCGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTTGTCACCAGCGAGGCGAGTGATAAGTGTCAAAGGGAAAAGAGGAAGACGATTAACGGCGATGATTTACTTTGGGCAATGGCAACTTTAGGGTTCGAGGATTACATCGATCCCCTGAAGATTTATCTGAGCAGATACAGGGAGATGGAGGGTGATACTAAGGGTTCGGCCAAGGGCGGAGAAGTATCTGCTAAGAAAGATGTTCAACCAAGTCCCAATGCTCAGCTCGCTCATCAAGGTTCATTCTCACAAGGTGTTAACTATACAAATTCTCAGGTTCAACATATGATGGTCCCTATGCAAGGCCCAGAATAG | 798 | 0.4925 | MCTGTTWSNHLPSRELKYRAPNGERESTKSPKRKEKGNYSPHPPRHIFSLLLLLLDLPPLSRVSFPSVPRVFLHLIDDVFVSFLCRIRIPATMAEGPASPGAGGSHEESGDQSPRFNFREQDRYLPIANISRIMKKGLPPNGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREMEGDTKGSAKGGEVSAKKDVQPSPNAQLAHQGSFSQGVNYTNSQVQHMMVPMQGPE | 265 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g1558 | 265 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 124 | 188 | IPR003958 | - | |
| Alju01g1558 | 265 | Gene3D | Histone, subunit A | 115 | 253 | IPR009072 | GO:0046982 | |
| Alju01g1558 | 265 | MobiDBLite | consensus disorder prediction | 95 | 116 | - | - | |
| Alju01g1558 | 265 | FunFam | Nuclear transcription factor Y subunit B-3 | 113 | 237 | - | - | |
| Alju01g1558 | 265 | PRINTS | CCAAT-binding transcription factor subunit A signature | 190 | 208 | - | - | |
| Alju01g1558 | 265 | PRINTS | CCAAT-binding transcription factor subunit A signature | 152 | 170 | - | - | |
| Alju01g1558 | 265 | PRINTS | CCAAT-binding transcription factor subunit A signature | 171 | 189 | - | - | |
| Alju01g1558 | 265 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 155 | 171 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
| Alju01g1558 | 265 | MobiDBLite | consensus disorder prediction | 13 | 41 | - | - | |
| Alju01g1558 | 265 | MobiDBLite | consensus disorder prediction | 213 | 244 | - | - | |
| Alju01g1558 | 265 | MobiDBLite | consensus disorder prediction | 229 | 244 | - | - | |
| Alju01g1558 | 265 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
| Alju01g1558 | 265 | SUPERFAMILY | Histone-fold | 121 | 221 | IPR009072 | GO:0046982 | |
| Alju01g1558 | 265 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 106 | 241 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g1558 | Alju-ChrAlju01 | 12518686 | 12521497 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g1558 | 93 | 265 | CCAAT-HAP3 Transcription Factor Family | AT2G37060 | 76.536 | 5.99e-89 | 259 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | NF-YB | Alju01g1558 | CBFD_NFYB_HMF | 7e-27 | CL0012 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju01g1558 | 01 | 12518686 | 12521497 | Alju01g1558 | 01 | 12518686 | 12521497 | ECH |