Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1534 ATGCAGATATTTGTGAAAACCCTAACGGGAAAGACAATCACCTTGGAGGTGGAGAGCTCCGATACCATTGATAATGTCAAGACTAAGATCCAGGATAAGGAAGGGATTCCCCCTGACCAGCAGAGACTCATATTTTCCGGCAAGCAACTCGAGGACGGTCGTACTCTCGCCGATTACAATATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGCCTAAGGGGAGGCATGCAAATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTCGAGGTAGAAAGCTCTGACACAATCGATAACGTCAAAACCAAGATACAGGACAAGGAAGCTATTCTGGTATCTGGGTGGTATAATCATCCAATGACAGAGGTCACGCTCTGTTGCCATAGGCCGGTTTTTAGATTTGATGGTATGTTTATCTATAACGATGAGGATGCGTGCAAGTGGAGAACTTGGTTGCACAAGCCATTGCCTTGCTTGTCTTGTGATATGTCTGTAGGTCTTTGTCGACAGCCAGATGTGGTGGATGCCTTCCTGCATCTTCGTTGTCTATGGTATGCAAGTATTTCACGTTATGATAGAATTTTCACTAAGAAAAACTTTCCAATTCGTGTGGACAATATGATGGACGATACTGATGGTCCTGGTAATAACAATTCTCTCTGCATCATAGAAGCAATGGAACGCCTCTGGTTTCACCAAATCGTTCTTTCCTCACAAGAAAGCACAACACCAGTTTCTCCCAAAACTGTCGAACCTCTTTCGTCAACATCAGAATCTCTGTCTTTCCCATCGTCTTCTGATTCCATTCTCTCTCTGCCTCCTCCACCATATGACGAGAGTTCAACACAGGAATCCCCCAAAAAACTTAGCTCATCATATTCAATCTCACCGTTTCTGCAGGGTGATTCAAATGATGAAGAAGGAAAGAAAGAAGGCCACACTAGATTAACGAGTGTTTCGAGTAAAAGAGTTCGGTCACTGTCATTTTCGCCATCAACACAAAACCAGAGGGGGAAATTAAGGAGACAAGCTAAAAAGAGGCTACAAAAGTCCATGAGCTGCAAGACACTGGGGGAATTAGAACTCGAAGAAGTGAAGGGTTTTACGGATCTGGGTTTCGTTTTCAAGAAAGAGAATATAAGCCCGCGAATGATGAGTGTAGTTCCGGGCTTGCAGAGACTGGGTATTCGCTCAAATGGACAGGGCAAACAAGTAATTGATGCCTCAGAACCGAGGGAAAAGAAGAAAGAAATAAAGAGACCATATCTATCGGAGGCATGGCTGATAAAGAGACCGGATTCACCACTACTAAACATGAAGATTTCAAAGCTGCGTTCAAGTGCAGATATGAAAAGACTTCTAAGATTCTGGGCCAGAAGTGTGGCCTCAGAAATCCACCACGAATGA 1413 0.4444 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEAILVSGWYNHPMTEVTLCCHRPVFRFDGMFIYNDEDACKWRTWLHKPLPCLSCDMSVGLCRQPDVVDAFLHLRCLWYASISRYDRIFTKKNFPIRVDNMMDDTDGPGNNNSLCIIEAMERLWFHQIVLSSQESTTPVSPKTVEPLSSTSESLSFPSSSDSILSLPPPPYDESSTQESPKKLSSSYSISPFLQGDSNDEEGKKEGHTRLTSVSSKRVRSLSFSPSTQNQRGKLRRQAKKRLQKSMSCKTLGELELEEVKGFTDLGFVFKKENISPRMMSVVPGLQRLGIRSNGQGKQVIDASEPREKKKEIKRPYLSEAWLIKRPDSPLLNMKISKLRSSADMKRLLRFWARSVASEIHHE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1534 470 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Alju01g1534 470 MobiDBLite consensus disorder prediction 305 320 - -
Alju01g1534 470 MobiDBLite consensus disorder prediction 243 270 - -
Alju01g1534 470 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Alju01g1534 470 MobiDBLite consensus disorder prediction 243 349 - -
Alju01g1534 470 SUPERFAMILY Ubiquitin-like 75 144 IPR029071 -
Alju01g1534 470 FunFam Polyubiquitin 3 1 76 - -
Alju01g1534 470 MobiDBLite consensus disorder prediction 277 303 - -
Alju01g1534 470 PRINTS Ubiquitin signature 32 52 IPR019956 -
Alju01g1534 470 PRINTS Ubiquitin signature 53 74 IPR019956 -
Alju01g1534 470 PRINTS Ubiquitin signature 11 31 IPR019956 -
Alju01g1534 470 ProSiteProfiles Ubiquitin domain profile. 77 112 IPR000626 GO:0005515
Alju01g1534 470 PANTHER UBIQUITIN 77 113 - -
Alju01g1534 470 FunFam Polyubiquitin-C 77 110 - -
Alju01g1534 470 MobiDBLite consensus disorder prediction 321 340 - -
Alju01g1534 470 CDD Ubl_ubiquitin 1 76 - -
Alju01g1534 470 Gene3D - 1 76 - -
Alju01g1534 470 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Alju01g1534 470 SMART ubq_7 1 72 IPR000626 GO:0005515
Alju01g1534 470 SMART ubq_7 77 130 IPR000626 GO:0005515
Alju01g1534 470 Gene3D - 77 129 - -
Alju01g1534 470 Pfam Ubiquitin family 79 114 IPR000626 GO:0005515
Alju01g1534 470 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1534 Alju-ChrAlju01 12303398 12307393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1534 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.104 8.16e-46 154