Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1533 ATGGGACATAGACATTTGTATAGCATATCTCAGATGTTTGGGAGTGAGCATGAGCAGAATTGGAATTATATGCATCCTGATCAACATAATGTGCAACTAGGTAGGGCTAGCACTTCAGAGAATGGTTCTTTTACTCATCCACTAGAAAATATGTCTATAGATGGCAACTCTTTGGCTGCTCCTTGGAACAATGCCACTATGTCAAATGGATATGCATCCTCAAGTATCAACATTGAATTACCCCCTCATCAATCAGATGCATCAAGATCTTCTCATGATCATTTTTTGCGTTCATCAAATCCAGAAGCCTTTTTTGCAGTTTCCGAAAACTATGCTTGCCAGCCTTCTTCCAATTATGATAGACAAGCATTTCATGTTGCCGATGGTGGTTTCTTTGATTTTACAATGGGAAGCGGAAGAGGACCTCAGAAGCGGAAGAGCCCTGGAATTCCTTCAGTGTGTGAGAGAGGCAGCTCAAGTAGATATTTCGGTGCAGGAAGCTCAACTGATTCCCCTATATCTTCAGAAATAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATATCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGATGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACGCATTTATCTAACAACCATTTGCACAACTTATCTTTTGGCCCGTCCACTGACCATTCTAGCGCAGTGGGTCTTTCTGGTCATAGCTCTAGTACTATGACAAGGGACTGGAGCCAAATGAACATGTCTCCTGCTCATGGGAGTGTATTATTATCTGAATCAAGTGGATATAATCATGAGCCAAGTCGCTTGCTAGTTGGAAGCGGTGTTAGCAATGCTTCGGTGGATGCTGGGAGTTACCATCATGAATATAATACGAGCATAAATCCTACTGTTCCTCAAAGTTTTGACAGTAACCCCACTCACCCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTGCTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCACGTGTGGGACATATGGTGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTTATGTATAGACATCCAAGACCATTGACTGCCATCAGTTGGCGGAATAGTGATAGAAATGGGAGGTCAAGGATATCTAATGAGAGTTATCAATCATTGGCTGACGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCACGGTTGTTGGTCCTGTGCCACTGTATGGTTCTCGAAATATGATTGATCAGCATAGAGATATGAGGATGGACGTAGACAATATGAGTTACGAGGAACTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCGGAGAACTTGATTTCCAAGTGTTTGACAGAATCAATACATTGTTCATCCGAGCAGAGTCAAGAGGAAGGAAGTTGTATCATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGTTGCGGCCATGACTATCATGTGAGCTGCATTAGAAAGTGGTTGTCTATGAAGAACGTATGTCCTATCTGCAAAGCCTCTGCTCTTCCTGATGAAATGAAGGATAAATAA 1656 0.4348 MGHRHLYSISQMFGSEHEQNWNYMHPDQHNVQLGRASTSENGSFTHPLENMSIDGNSLAAPWNNATMSNGYASSSINIELPPHQSDASRSSHDHFLRSSNPEAFFAVSENYACQPSSNYDRQAFHVADGGFFDFTMGSGRGPQKRKSPGIPSVCERGSSSRYFGAGSSTDSPISSEIRQEKPSLDSQYLPWDHVTMTPPFRGSGLSIRGDGSLRNVRSRSALDLESNLARTHLSNNHLHNLSFGPSTDHSSAVGLSGHSSSTMTRDWSQMNMSPAHGSVLLSESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYNTSINPTVPQSFDSNPTHPARGVRSNYSQRSAPTPTPTFRASSSSRVGHMVPSDGGLHMGAEGFMYRHPRPLTAISWRNSDRNGRSRISNESYQSLADEAILHDRFSSEGFTVVGPVPLYGSRNMIDQHRDMRMDVDNMSYEELLALGERIGHVSTGLSENLISKCLTESIHCSSEQSQEEGSCIICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLSMKNVCPICKASALPDEMKDK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1533 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 544 IPR013083 -
Alju01g1533 551 SMART ring_2 498 539 IPR001841 -
Alju01g1533 551 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 463 544 - -
Alju01g1533 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 544 IPR045191 GO:0061630
Alju01g1533 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Alju01g1533 551 SUPERFAMILY RING/U-box 488 544 - -
Alju01g1533 551 MobiDBLite consensus disorder prediction 139 158 - -
Alju01g1533 551 CDD RING-H2_RNF24-like 498 543 - -
Alju01g1533 551 Pfam Ring finger domain 497 540 IPR001841 -
Alju01g1533 551 MobiDBLite consensus disorder prediction 311 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1533 Alju-ChrAlju01 12298488 12301111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1533 1 550 C3H Transcription Factor Family AT2G37150 41.947 2.67e-109 335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1533 01 12298488 12301111 Alju01g1533 01 12298488 12301111 ECH