Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1529 ATGCAAATGCTCTCTGCGGATCCCTTTTCTTTATCCTCTTCCATCCGAGCCTTCCCTCCCGACCCTAACCCAAACCCTAACCCTAAACTCAATCCCCCTCCTCTCCCAAAAAAGAAGAGAAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCTCTGTCGCCTAAATCTCTCATGGCTACAAACCGATTCATATGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTGCAGCTTCACAGGAGGGGGCACAACCTGCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCAGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTGCACCACGACCCGTCCAGAGCATTGGGGGACCTCACAGGGATAAAGAAGCATTATAGCAGAAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAATGCGACTGTGGTACCCTCTTCTCTAGGAAGGATAGTTTCATCACCCACAGAGCTTTCTGTGATGCCTTGACAGAAGAGAGCGCGAGGCTCACCTCAGTTGGCACGTCAGATTTGAATTTTAAAAACGAAGAGAGTGTGATGAACTCTAACTCTCAGCTTAGCTCGGCTCATGGATTTGGCATTTCGCAATTCGGTGCAAATGGTTTTCGTTCAGAATTTGATGGAATGGGCATGAGTATGGGTGGTGCGGACCAGCAAATCATGAGGCCAAACTTGTCACTGTGGTTGAACCAGCTGGGAAATTCTGGTCTTTATGTGTCAAATTCGAGTTCTTCAGGTTTGCCCGAGATCAATATGCAAATGCCTCAACCTAATAACACTTTTGCTCCTTCTTCTTTGTCCAGTTATTCCCCATCAATTGGGAAAAAAGGAGAGAGTAGTGGAAGTGGAAACTTAGTATCTATTTATAATTCAGAGTCTCGAAGCAATCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAACTGGGTTCAACCAGAAGCAGCAACCCTTCCATATTTAGCGGTAGTTTTGGAGTAATGAGCTCGTCTTCTTCCCAGACAACGGCAAGTCTCGAAAACAACAACGCAGACCAAAACCAAAACCGTAACAACAACGAGCTGAACCAAGTGTATCATCATCAGAGTATGAAGCAATCAGAGAATTTTAGTTCAAGTAGCAGTGGTGTCGGTGGAACGTTGGGGATAAGCAATAACAACAACTTCAGCTCATTGACGCATTCATCGAGCAGTGGTCTTGATGATCTTGTGTCACAGTCCCATGGAAGACAAAGTAACAACAAACAAGTGCAACTGAAGCTGCATCCTGATTCAAACAATGGAGAACATGGTTACACCAGAGATTTTCTTGGAATGAGCGGACCAGGAGGAGTAGGGGCTGGCTCTCCTTTCCTTCCCCAAGAGTTCGCTAAATTTGCTTCTCTTGCCTCATCCATGGGAATGTCTCAGTTCCCGAGTGGTACTACTCATTAA 1563 0.4632 MQMLSADPFSLSSSIRAFPPDPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEESVMNSNSQLSSAHGFGISQFGANGFRSEFDGMGMSMGGADQQIMRPNLSLWLNQLGNSGLYVSNSSSSGLPEINMQMPQPNNTFAPSSLSSYSPSIGKKGESSGSGNLVSIYNSESRSNQSKPASPMSATALLQKAAQLGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNNADQNQNRNNNELNQVYHHQSMKQSENFSSSSSGVGGTLGISNNNNFSSLTHSSSSGLDDLVSQSHGRQSNNKQVQLKLHPDSNNGEHGYTRDFLGMSGPGGVGAGSPFLPQEFAKFASLASSMGMSQFPSGTTH 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1529 520 MobiDBLite consensus disorder prediction 436 475 - -
Alju01g1529 520 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Alju01g1529 520 FunFam protein indeterminate-domain 12-like 45 113 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 19 41 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 285 343 - -
Alju01g1529 520 SMART c2h2final6 66 88 IPR013087 -
Alju01g1529 520 SMART c2h2final6 107 137 IPR013087 -
Alju01g1529 520 SMART c2h2final6 142 162 IPR013087 -
Alju01g1529 520 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Alju01g1529 520 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Alju01g1529 520 Gene3D Classic Zinc Finger 45 118 - -
Alju01g1529 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Alju01g1529 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 497 IPR031140 -
Alju01g1529 520 Gene3D Classic Zinc Finger 120 199 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 1 50 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 1 18 - -
Alju01g1529 520 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 374 393 - -
Alju01g1529 520 MobiDBLite consensus disorder prediction 436 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1529 Alju-ChrAlju01 12258669 12260454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1529 1 505 IDZ Gene Family AT5G03150 48.901 2.57e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1529 zf-C2H2_jaz 7.6e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1529 01 12258669 12260454 Alju03g2960 03 54884895 54885983 CCT
Alju01g1529 01 12258669 12260454 Alju01g1529 01 12258669 12260454 ECH