Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1525 ATGGGTAACATAGGAAGTAGCAGCGCTAACGGCCGTCGGAGAAGCAATAGGAGACGGAGTCATCCGCCGCCGCCGGCGGTTAGGCCGCAGCCAGAAATCGCGCCGAATCGGTCTGTTAATCCAGCATCTACACCTCAGACATCGCAATCCCCAAACTCGAATCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCACTCCCCATCAGGCTGTGCCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATCCACAAACGGACCCGTCAAGGACGGGTGCTAGTTACCATTGCGGGCCTGCTCCATATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCCGATGAGCAGAATCCTGGGCGCTTCCTCGTTGCTTTCACATTCGATGCCACCGTTGATGGGAGCATCACCATTCTTTTCTTTGGTAAAGAAGATAATAGCTGCGTCCTCACACCAATGAAACAAAATATTCTTGCCCCTGTAACTGTAAGTTTCCAGCAAGGTCTTGGGCAGCAGTTTAAGCAGCCAATTGGAACTGGTATTGACTTTTCAATCTTTGAGGAGTCAGAATTATCAGAAGTGGGTGTAATAAATGTGTTCCCTCTAGCAGTGAAGGCAGATGCATCCGGTGGCGAACAAGATGGATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACACTGGCAGCATTTGAGAAGGAGAAAGGAAAATTCCGTGTAAAGGTAGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGTTAATTCAGTGGAGAGTGACTTGGATGAGAATGATTCTGGAAAGGAGTGTGTTATCTGCCTCTCGGAGCCACGAGACACAACTGTTCTTCCCTGCCGACACATGTGCATGTGCAGTGGGTGTGCTCAGGTTCTGAGGTTTCAGGCGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTCTGGAGATAAAGGTCAATAATGATAACCGGCCTGAGGAATGA 1077 0.4838 MGNIGSSSANGRRRSNRRRSHPPPPAVRPQPEIAPNRSVNPASTPQTSQSPNSNPSPYFQYPGHYSTPHQAVPAPLPAPLDHHHRARPHPQTDPSRTGASYHCGPAPYVEHQKAVTIRNDVNVKKETLRIEPDEQNPGRFLVAFTFDATVDGSITILFFGKEDNSCVLTPMKQNILAPVTVSFQQGLGQQFKQPIGTGIDFSIFEESELSEVGVINVFPLAVKADASGGEQDGSNENLTSGNRNSQITLAAFEKEKGKFRVKVVKQILWVNEMRYELQEIYGIVNSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAQVLRFQANRCPICRQPVERLLEIKVNNDNRPEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1525 358 SMART ring_2 300 338 IPR001841 -
Alju01g1525 358 SUPERFAMILY RING/U-box 299 345 - -
Alju01g1525 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 349 IPR013083 -
Alju01g1525 358 FunFam probable E3 ubiquitin-protein ligase LOG2 284 349 - -
Alju01g1525 358 MobiDBLite consensus disorder prediction 1 100 - -
Alju01g1525 358 PIRSF SBP1_RNase_bind 17 101 IPR017066 -
Alju01g1525 358 PIRSF SBP1_RNase_bind 234 350 IPR017066 -
Alju01g1525 358 ProSiteProfiles Zinc finger RING-type profile. 300 339 IPR001841 -
Alju01g1525 358 MobiDBLite consensus disorder prediction 36 63 - -
Alju01g1525 358 PANTHER MAHOGUNIN 1 352 IPR045194 GO:0061630
Alju01g1525 358 Pfam Zinc finger, C3HC4 type (RING finger) 298 344 - -
Alju01g1525 358 CDD mRING-HC-C3HC5_MGRN1-like 298 339 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1525 Alju-ChrAlju01 12234576 12237092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1525 105 319 C3H Transcription Factor Family AT3G09770 63.514 1.42e-93 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1525 01 12234576 12237092 Alju01g1525 01 12234576 12237092 ECH