LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1524	ATGAAGATTCCTCGTTCATTTCTCGCTTGTTTCTCACCTTCAGTCAACGAAACAAGTCACCTAGATGATGAATCAGAAGGAGGCAATGATGGCGAAGCATTTCGTGTATTCTCTGGCAGCGAATTGAAATTAGCCACTCGTGGTTTCAATTCCTGCAACAAGGTTGGAGAAGGCGGATTCGGTTCTGTTTACAAGGGGCAGCTTCGGAACGGTAATGTTGTGGCTGTGAAAGTGCTTTCAATCGAACTGGAATCCATGCGAGGAGAAATGGAGTTCGTGGCAGAATTGGCCACACTGGGTCGTATCAAGCACGAAAATCTAGTTAGTCTTAGAGGGTGTTCTGTCGAAGAAGCCCGAAGATATTTGGTCTTCGATTACATGCAAAACAACAGCCTCTCCCGCACTTTTCTAGGCACAGAGGAAAGAAGGATGAAATTCAGATGGGAATTGAGGAGCAACATATCTATAGGGGTGGCACGTGGCCTTGCCTATCTCCACGACCAACTAGAACCCCACATTGTCCATCGAGATATCAAGCCCAGCAACATCCTCCTCGATCATAACTTCACACCGAAACTATCTGACTTTGGCTTCGCCAAGCTATTTAGGGACGACAAGTCCTACGTCAGTACTAGAGTCGCTGGTACATTGGGCTATCTTGCTCCCGAGTATGCCACTACTGGGAAGTTGACACGGAAGACAGATGTTTACAGCTTTGGAGTATCACTCTTACAAATTGTTAGCGGCCAAGCAGTAGTTGATGCTTATCAGGATACGGATCGTTTCCTAGTAGAGAAGGTGTGGGCAGCTTATAAAGCTAACGAGCTAGTAAAAATGGTGGATCCTGTGATTACAAATCTGAGCTTGGCGGCAGAAGAAGCCGTTAGGTTCCTAAAAGTGGGGCTTCTTTGCGTGCAAGAAACCGTCAGGCTTCGGCCAAGAATGACACGGGCCGTTGAGATGTTGACTAATAGCAGCAATATTATTAATGACATGGAAGGGGTTGCTATTTCAAAACCAGGCTTTGTTGCTGATCTCAGAAACATCAAAATAAGGCAGCAAATGCCTGTGAGTCCCGAATCTATTTCAAGTGGAACCAAACAGGGTCTTTGGAGTTCCTCGTTCTGGCCCGTTAAAATATAA	1143	0.4593	MKIPRSFLACFSPSVNETSHLDDESEGGNDGEAFRVFSGSELKLATRGFNSCNKVGEGGFGSVYKGQLRNGNVVAVKVLSIELESMRGEMEFVAELATLGRIKHENLVSLRGCSVEEARRYLVFDYMQNNSLSRTFLGTEERRMKFRWELRSNISIGVARGLAYLHDQLEPHIVHRDIKPSNILLDHNFTPKLSDFGFAKLFRDDKSYVSTRVAGTLGYLAPEYATTGKLTRKTDVYSFGVSLLQIVSGQAVVDAYQDTDRFLVEKVWAAYKANELVKMVDPVITNLSLAAEEAVRFLKVGLLCVQETVRLRPRMTRAVEMLTNSSNIINDMEGVAISKPGFVADLRNIKIRQQMPVSPESISSGTKQGLWSSSFWPVKI	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1524	380	Gene3D	Transferase(Phosphotransferase) domain 1	127	336	-	-
	Alju01g1524	380	Pfam	Protein kinase domain	51	312	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1524	380	CDD	STKc_IRAK	55	324	-	-
	Alju01g1524	380	ProSitePatterns	Protein kinases ATP-binding region signature.	55	77	IPR017441	GO:0005524
	Alju01g1524	380	SMART	serkin_6	49	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1524	380	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	24	126	-	-
	Alju01g1524	380	SUPERFAMILY	Protein kinase-like (PK-like)	34	322	IPR011009	-
	Alju01g1524	380	Gene3D	Phosphorylase Kinase; domain 1	16	126	-	-
	Alju01g1524	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Alju01g1524	380	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	127	332	-	-
	Alju01g1524	380	ProSiteProfiles	Protein kinase domain profile.	49	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g1524	380	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	35	357	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1524	Alju-ChrAlju01	12227198	12228897	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g1524	20	345	Receptor kinase-like Gene Family	AT1G56120	45.566	2.87e-86	277

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Alju01g1524		Pkinase	3.4e-48	CL0016