Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1514 ATGAAGTCCACAAAGCGACGACGTTGTTCCTTCCATAAGCTTTTAGCTTATTCACAAAGTTCTCTGACATACCTTCTAGCAGGTGAAATTCACAGGTTTCAATTGAGCGCTGTGGCCTCTGGTAGATCAAAATCTGTAAGCTGGTTTCAGGATAACATTGAGAAAGATATAGTGATGACTAGAATAGAAAGTCCAATGTCGAAGCCAGATTATAAGATGAATGCAAGAAACATGTTGATGCAGAGAAAAAACCTTTCAAGGGTGTTTTCTGAGGATTATGATGCCTCGAAGAGGAAGATATTCGATCCGAGGGGACCAAGAGTAAACAGATGGAACAAAATTTTCTTAGTAGCATGTTTGATTTCACTATTTGTGGATCCCTTCTTCTTTTACGTGCAAGAGGCTAAGAAAGACAAGTGCATTGCTACATCTGAGCGACTCGAAGTTTCCCTTACCACAATTCGGTCCATGGTTGATGCATTTTACATCATTCATATATTTATTCGGTTTCAAACTGCTTATGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTAGTTATAGACCCTTCAAAGATTGCATCAAGGTACCTCCAAAAAGACTTCTGGCTTGATCTTCTGGCAGCCCTCCCTGTTCCCCAGGTGTTGATTATAGCTGTAATTCCAAATCTGAGTGGGTCAAAAATGATTGCTTCAAGGGAGACTCTGCGCCTTGTGATCATTTTCCAGTACCTGTTAAGGTTATATCATATCTTCCCTCTTTCATCTGAAATAGTTAAGGCAAATGGAGTAATGATGGAAAAAACATGGGCTGGGGCAGCATATAACCTTATGCTCTATATGCTGGCAAGTCATGTCTTAGGATCCTCCTGGTACCTGTTGGCAATAGAGAGGCAGGATGAATGTTGGAAAAAAGCTTGTAATCTTGAGTTCCCATTTTGTCAATACCGTTATCTTGATTGCCAAAGCATAAGTGAGCCAGCCAGAGCAGCCTGGTTTAGATCAAGCAACCTGTCAACTTTATGTGATAAGGACAGTGATTTTTTCCAGTTTGGTATTTTTGCCGATGCTCTCACTTTGGAAATCGCAGACTCAAAGTTCTTAAGCCGATATTATTATTGTCTTTGGTGGGGTCTGCGGAATCTCAGCTCTCTGGGACAGAATCTCCTAACCAGCACTCAGGTTGGAGAGATAAATTTTGCTGTGATTATTGCAATTCTTGGGTTGGTGTTTTTTGCACTTCTAATAGGAAACATGCAAACGTACCTGCAATCCACTACTAGGCGACTGGAAGAATGGAGAATAAGACGCACAGATACAGAACGATGGATGCATCACAGACAGTTACCTCATTACTTGAAACGAAGTGTGAGACGCTATGAACAATTCAGATGGGTTGCTACGCGAGGAGTTGACGAGGAATCCATCCTTCAAGACCTCCCTATCGATATCAGACGCGACATCAAACGGCACCTCTGCCTCAACCTCGTCCGACAAGTACCCCTGTTTGATCAGATGGACGAGAGGGTGCTAAACGCAATATGTGAAAGACTGAAACCTTCTCTCTGTATTCAAGGAACGCTCCTAGTTCACGAAGGAGATCCTGTGACTGAAATGCGCTTTATAATTCGAGGACGTTTAGATTCTTGTACAACTAATGGTGGCAGAACCGGCTTCTTCAACTGTTGTAAAATCGGACCGGGTGATTTTTGTGGGGAGGAGCTATTGCCATGGGCTCTGGACCCACGTCCAAGTGCTGTCCTTCCTTCATCAACTCGCACAGTGAAGGCCCTCACAGAAGTGGAAGCTTTCGCGCTCGTAGCCGAAGACTTAAAATTTGTGGCAGCTCAGTTCAGGAGACTACACAGCAGGCAACTGAGGCACACTTTCAGGTTTCATTCGCATCAATGGAGGGCATGGGCTGCTTGTTTCATACAAGCGGCTTGGTTCAGATATAAGAGAAGGAAAGAGGCGAGTGAGCTGACTCATAAGGAGTACTATTGTGATGCTGGTGACACGAAGGTGGAACATTTCTCTGAGCCTTTACACTTGCAACCTCGGATAGGTTCGAGGGCTACGATGAATAAATTGGCTCAGTTGGGATGTAGCCCCAGGAAAGGTGGAAGCTTGCGATATGGTTCTGAACTTGATATTCTTGTTTCACTCAGGAAGCCCCTTGAACCTGACTTTAGTACTGTTGAAGATTAA 2211 0.4378 MKSTKRRRCSFHKLLAYSQSSLTYLLAGEIHRFQLSAVASGRSKSVSWFQDNIEKDIVMTRIESPMSKPDYKMNARNMLMQRKNLSRVFSEDYDASKRKIFDPRGPRVNRWNKIFLVACLISLFVDPFFFYVQEAKKDKCIATSERLEVSLTTIRSMVDAFYIIHIFIRFQTAYVAPSSRVFGRGELVIDPSKIASRYLQKDFWLDLLAALPVPQVLIIAVIPNLSGSKMIASRETLRLVIIFQYLLRLYHIFPLSSEIVKANGVMMEKTWAGAAYNLMLYMLASHVLGSSWYLLAIERQDECWKKACNLEFPFCQYRYLDCQSISEPARAAWFRSSNLSTLCDKDSDFFQFGIFADALTLEIADSKFLSRYYYCLWWGLRNLSSLGQNLLTSTQVGEINFAVIIAILGLVFFALLIGNMQTYLQSTTRRLEEWRIRRTDTERWMHHRQLPHYLKRSVRRYEQFRWVATRGVDEESILQDLPIDIRRDIKRHLCLNLVRQVPLFDQMDERVLNAICERLKPSLCIQGTLLVHEGDPVTEMRFIIRGRLDSCTTNGGRTGFFNCCKIGPGDFCGEELLPWALDPRPSAVLPSSTRTVKALTEVEAFALVAEDLKFVAAQFRRLHSRQLRHTFRFHSHQWRAWAACFIQAAWFRYKRRKEASELTHKEYYCDAGDTKVEHFSEPLHLQPRIGSRATMNKLAQLGCSPRKGGSLRYGSELDILVSLRKPLEPDFSTVED 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 398 409 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 283 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 166 175 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 372 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 466 473 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 PRINTS EAG/ELK/ERG potassium channel family signature 416 425 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g1514 736 SUPERFAMILY cAMP-binding domain-like 432 624 IPR018490 -
Alju01g1514 736 Gene3D Jelly Rolls 501 621 IPR014710 -
Alju01g1514 736 ProSiteProfiles cAMP/cGMP binding motif profile. 503 588 IPR000595 -
Alju01g1514 736 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 687 - -
Alju01g1514 736 SUPERFAMILY Voltage-gated potassium channels 102 425 - -
Alju01g1514 736 Gene3D - 113 427 - -
Alju01g1514 736 Gene3D Helix hairpin bin 430 494 - -
Alju01g1514 736 SMART cnmp_10 503 634 IPR000595 -
Alju01g1514 736 Pfam Ion transport protein 111 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju01g1514 736 CDD CAP_ED 503 634 IPR000595 -
Alju01g1514 736 FunFam Cyclic nucleotide-gated ion channel 1 501 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1514 Alju-ChrAlju01 12146155 12149114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1514 73 733 Ion Channels AT2G28260 63.691 0.0 879