Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1488 ATGGGTAGGGCTCCTTGCTGCGATAAGGCCAATGTAAAGAAGGGACCCTGGTCTCCTGAAGAAGATGCTCAGCTAAAGGAGTACATAGAGAAACATGGAACTGGAGGCAATTGGATTGCTCTCCCTCAAAAAGCTGGTCTCAAAAGATGTGGGAAAAGCTGTAGACTAAGATGGCTCAACTATCTCCGACCTGACATCAAACACGGCGAGTTCTCCGATCATGAAGATAGGATCATCTGCAGCCTCTTTGCTAGCATCGGAAGCAGATCTGATGATTTGAGCATTAACGTGACAAAGTGCAGGTGGTCAGTGATAGCATCTCAGTTGCCAGGAAGGACTGATAACGATATTAAGAACTACTGGAACACCAAGCTTAAGAAGAAGATGATAGGCTTTAATATTAATCCTTCACCTCCTCATCATCATCATCACCAAGCTACCCTTTTACCGCTTCTCCAAAATTCAACTCCTTCTTCATCCTCATCATCAGCTTCTTCACCATTATCATCAGTCACAGACAACAACACCAACCATTCCTCTTACTGTCACCCAGCTCCTTATGCTTCTTCATTCTCAGGCGCTGATCATTCCATTTCGTTCTCGTGGTCGTCGGCGGCGAGATTCTTGAACGGCCATTCCTCTACTTGTGCTTCTGCTGCTGCAGCTGGCTTTTTCTATCAACCCCAAGAAAGTTTGATGGGTCACCATCATCATCATGTGAAAGAAGCTGATGAAGCTACTGCTACTGGATTTGTAGTAGATCAAGGAACTATGGTGGAACAGATGATAGCTGCCAATAATTATAACTATGATGATCTGCACAATATTGGGATGGAAAATATGGAAGAAACCCAGAAGGCGATGGGCGTGTGTGATGGCGACTACGTGAATGGACTGTGGGAAGAGAATCCGCCATTAGATTACGGGATTGAAGAAATTAAGCAGCTAATAAGTTCTACTAATAGCTGCAACAGCTTTTTGTTTGATGACAACGTGACACATCAAAGGGCCTTGTACTACTACTGA 1026 0.4435 MGRAPCCDKANVKKGPWSPEEDAQLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGEFSDHEDRIICSLFASIGSRSDDLSINVTKCRWSVIASQLPGRTDNDIKNYWNTKLKKKMIGFNINPSPPHHHHHQATLLPLLQNSTPSSSSSSASSPLSSVTDNNTNHSSYCHPAPYASSFSGADHSISFSWSSAARFLNGHSSTCASAAAAGFFYQPQESLMGHHHHHVKEADEATATGFVVDQGTMVEQMIAANNYNYDDLHNIGMENMEETQKAMGVCDGDYVNGLWEENPPLDYGIEEIKQLISSTNSCNSFLFDDNVTHQRALYYY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1488 341 FunFam Transcription factor RAX3 7 68 - -
Alju01g1488 341 Gene3D - 70 145 - -
Alju01g1488 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 129 IPR017930 -
Alju01g1488 341 SUPERFAMILY Homeodomain-like 11 121 IPR009057 -
Alju01g1488 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Alju01g1488 341 ProSiteProfiles Myb-like domain profile. 63 125 IPR001005 -
Alju01g1488 341 CDD SANT 16 62 IPR001005 -
Alju01g1488 341 SMART sant 13 64 IPR001005 -
Alju01g1488 341 SMART sant 67 127 IPR001005 -
Alju01g1488 341 PANTHER OS09G0431300 PROTEIN 1 268 - -
Alju01g1488 341 CDD SANT 70 125 IPR001005 -
Alju01g1488 341 Gene3D - 7 68 - -
Alju01g1488 341 MobiDBLite consensus disorder prediction 153 173 - -
Alju01g1488 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Alju01g1488 341 Pfam Myb-like DNA-binding domain 69 123 IPR001005 -
Alju01g1488 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1488 Alju-ChrAlju01 11901795 11903073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1488 1 131 MYB Transcription Factor Family AT5G57620 77.863 1.48e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g1488 Myb_DNA-binding 3.7e-07 CL0123