Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1483 ATGCCGGATTCTTACGATTTCTCCCTGCACGGGTACGCCGGAGTTTTAGCGGACCAAATATTAGAAAGCGAAGAGGAATCTGCCGCCAGCGAAGAAGAGGAGGAGGATGACGAGGAGGAGGAGGATGACGACGAGGACGAGTACCAGGCCGAAGAGTACATTCCGCTTGTACAGTCTCCTACGTCATTACGGGGCGTTCCTTTTACCTCCAATCAACATGATACCATAATTCAAGAGGTTCCGGATGATTGTGTTGAAGAAGAGGTAAACAAACGGCGGAGGACTGAAGGGGGAGAAACGTGTTCATCTTTGGGAATTGGGAGCGCCGACAGTAGTCAAGGGAATGAGTTGAACCGTGCTGACATTGATGGCTTGTATTGCCCCATTTGCCTGGAAGCTTGGACCAATGACGGTGAACACCATATCTGCTGTCTTCCGTGCGGGCACATATATGGTATGTCTTGCATCAAAAGGTGGCTTCAACAGCGAAAAAATTCTGGGAAGTGTCCACAATGCAACAGGAAATGTGCATTGAGGGATGTGAGGAAACTCTATGCTTCACGTGTACTTGCTGTTGATGAAGAGTTACACAAGAAAATTCGGTCGCTTGAGGCCAGATGTGCTATTCTCGAAGGCAAGGTCTCTGACTGGAGCAAGAAAGAAGCATCATGGAAGAGAAAAGAAGGTCAATTTCATCTTAAAGTTAAGAAACTTACGGAGAGAAATACATATTTGGAGCAGCTGATACAAGATACGGAAAGAAGGAAAACTAGTGCCATGGAGGCAATTGGGAATTGTCGATGGGGATCTGAATCAAAACATGGCTTTGGGGCAAAGATATATGGGAAAGGACATTGTTGCAATTTTGAATTGCAGAAAGAGTTTCAGCTGGGCAGTGCTCTTGTATTTGACATAAATGCTTCTAATAAAATTTTATTAATGGCACAAAGGCCAAAAGGGATAGGCGGACCTTACTTGTTAACTAAAATGAGCTTGATACCTCCATATGAGATGGAAGATATCTTGCTGCCTTCTGGTTCATGTGCTATTAAAGATCTCCATATTTCTCCTTCAAATAGTGACCTGGCCCTTTATGCTTCATTAGGAAGGAAATTATCAGTACTCAGCATGGAGAGCAACAATGTGGTTGTCAATTATGATCTACAGGTTCCTGCTTGGTCATGTTCATGGGATCTCAGCAGTTCCAATAATGTATACGCTGGACTACAGAATGGTTCTGTCTTGGTATTTGATTTGCGCCAAACTGCTGGGCCCATAAAATCCCTAAATGGGTTAACTAGCAACCCCGTTCATACTGTCCAGTCTCTTGTACAAGATTCCGGTCTTCCTTCAGGCGTTGGAACAATTCTATCTGCTTCTGCCATTGGCCTGTGTCAGTGGAGCATGGGTGCTGAAGAGGGGCCGTGTATGATTCCTGAAACTGGTAATAATGGGGTTTGTATATCTCTTGCCTATTGCCCAAGTAGTGATGATGTTGTCATGTCATACCGTCCCAAATTTGACATGTCCATTGACGGGTCTCTCTCTCAACCATCTCTCACTCCATCCCAAGTTATAGGACAAGGAGTCCAGGGCTCTCATGTTTTGTTCAAGAGACTTGGCGGAAGCCATTTTCAACCGTTGGGTTCCTCATGTGCCAATGTAAGTAACATTCGACTTCCAAAATGTGTAATAATTCATATAGAGAGTGAAAGCCGATGGTTAGCATCCGGAGATGAAGGTACATGTGAATTGGTCTTGCAAGAGTTGCCATCTTTTGGGGTTGTTCAGCGTTTGAAATTACCAGAGCATGTGCGGGATCTGAAGTATTCGCGTACCTTGAATCATGGATTACTGGGATGTTTAACTGGAAAGTCATTGCAACTTTTCTGTACCAAACTCTCTTGA 1908 0.4444 MPDSYDFSLHGYAGVLADQILESEEESAASEEEEEDDEEEEDDDEDEYQAEEYIPLVQSPTSLRGVPFTSNQHDTIIQEVPDDCVEEEVNKRRRTEGGETCSSLGIGSADSSQGNELNRADIDGLYCPICLEAWTNDGEHHICCLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCALRDVRKLYASRVLAVDEELHKKIRSLEARCAILEGKVSDWSKKEASWKRKEGQFHLKVKKLTERNTYLEQLIQDTERRKTSAMEAIGNCRWGSESKHGFGAKIYGKGHCCNFELQKEFQLGSALVFDINASNKILLMAQRPKGIGGPYLLTKMSLIPPYEMEDILLPSGSCAIKDLHISPSNSDLALYASLGRKLSVLSMESNNVVVNYDLQVPAWSCSWDLSSSNNVYAGLQNGSVLVFDLRQTAGPIKSLNGLTSNPVHTVQSLVQDSGLPSGVGTILSASAIGLCQWSMGAEEGPCMIPETGNNGVCISLAYCPSSDDVVMSYRPKFDMSIDGSLSQPSLTPSQVIGQGVQGSHVLFKRLGGSHFQPLGSSCANVSNIRLPKCVIIHIESESRWLASGDEGTCELVLQELPSFGVVQRLKLPEHVRDLKYSRTLNHGLLGCLTGKSLQLFCTKLS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1483 635 ProSiteProfiles Zinc finger RING-type profile. 127 173 IPR001841 -
Alju01g1483 635 SUPERFAMILY WD40 repeat-like 346 615 IPR036322 GO:0005515
Alju01g1483 635 SUPERFAMILY RING/U-box 122 178 - -
Alju01g1483 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 260 IPR013083 -
Alju01g1483 635 MobiDBLite consensus disorder prediction 91 113 - -
Alju01g1483 635 Coils Coil 235 255 - -
Alju01g1483 635 Gene3D - 337 513 IPR015943 GO:0005515
Alju01g1483 635 PANTHER RFWD3 PROTEIN 25 633 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Alju01g1483 635 Pfam Ring finger domain 126 173 IPR001841 -
Alju01g1483 635 Coils Coil 200 220 - -
Alju01g1483 635 CDD mRING-C3HGC3_RFWD3 123 185 - -
Alju01g1483 635 SMART ring_2 127 172 IPR001841 -
Alju01g1483 635 MobiDBLite consensus disorder prediction 24 50 - -
Alju01g1483 635 MobiDBLite consensus disorder prediction 18 50 - -
Alju01g1483 635 Coils Coil 20 41 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1483 126 178 C3H Transcription Factor Family AT1G51930 44.444 7.31e-08 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1483 01 11864946 11869245 Alju01g1483 01 11864946 11869245 ECH