Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1474 ATGGCAACGAAGACATCTTCAAGCCCTCAAGATCTTATGGTGACGAAGACATCTTCATCTCCCTCACCATCAAGTGCATCAACAAGAGCGATCTTCTGGGCTCTTTTGGTATTTCACCACCGCCCGTCTCTGATATTTTTCACGCAACGCACATCGTCCTTCCCCTCTCTCCTCTCCGGAGAGAAACCTCCCTTCCCGCCTCTGAGCTTTGCCTCCAGTCTCTGCCACCACTCTCATCGCCGTCTGAATTCTCCTTTCCGTTCCGGTTTAGAGATTCAACGGAAAGCGAGTGCAGAATCTGGAACGATGGACTGCATCGTGGAGCCGCAGATGTTAACCCAGGGAGTTTCTCACCTAGATGACGGCTCTCTTTTCGAGACAGGATCTGGCCATTACGGGTGTTCACACTATAGAAGGAGATGCAAGATAATAGCGCCATGTTGCAATGAAATATTCGGTTGCAGACATTGCCATAATGAATATAAGAACTCGATTGAACTGGACCCTGTTGATCGCCATGACGTTCCTCGTCACGATTTAAAGAGAGTTATCTGTTCCTTTTGTAGCACCGAGCAAGATGTTCAACAGATGTGCATTCAGTGCGGTATTTGCATGGGGAAGTACTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGTATCAAAGAATCAGTACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTCCATTGTAACAAATGTGGATGTTGCTATTCAAAATTGTTAAAGGACTCACACCGATGTGTTGAAAAGGCTATGCATCACAATTGTCCTGTTTGCTTTGAGTTTCTTTTTGATACCACAAAAGACATTACTGTATTGCCATGTGGTCACTCTATCCATCTGCAATGTGTGAGAGAAATGGAACAGCATCTCCAGTATTCTTGTCCTGTTTGCTCCAAATCATTTTGTGATATGTCGCGTGTTTGGGAGAGACTGGATCATGAGGTTGCATCAACACCTATGCCAGAAATATATCAAAATAAGATGGTCTGGATTCTATGTAATGACTGTGGGGAGACATCAGAGGTGAGCTTTCACGTTTTGGCGCATAAGTGTATAAAATGCAAATCCTACAACACCAGACAGACACAAGGTGGACCTGCATCATGCTCATCCAACATTTGA 1167 0.4447 MATKTSSSPQDLMVTKTSSSPSPSSASTRAIFWALLVFHHRPSLIFFTQRTSSFPSLLSGEKPPFPPLSFASSLCHHSHRRLNSPFRSGLEIQRKASAESGTMDCIVEPQMLTQGVSHLDDGSLFETGSGHYGCSHYRRRCKIIAPCCNEIFGCRHCHNEYKNSIELDPVDRHDVPRHDLKRVICSFCSTEQDVQQMCIQCGICMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSKLLKDSHRCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHSIHLQCVREMEQHLQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEIYQNKMVWILCNDCGETSEVSFHVLAHKCIKCKSYNTRQTQGGPASCSSNI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1474 388 ProSiteProfiles Zinc finger CTCHY-type profile. 205 269 IPR017921 -
Alju01g1474 388 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 118 378 - -
Alju01g1474 388 Pfam CHY zinc finger 134 215 IPR008913 GO:0008270
Alju01g1474 388 SUPERFAMILY Zinc hairpin stack 206 263 IPR037275 -
Alju01g1474 388 ProSiteProfiles Zinc finger RING-type profile. 270 313 IPR001841 -
Alju01g1474 388 SUPERFAMILY CHY zinc finger-like 130 204 IPR037274 GO:0008270
Alju01g1474 388 Coils Coil 384 388 - -
Alju01g1474 388 SMART ring_2 270 312 IPR001841 -
Alju01g1474 388 Pfam Ring finger domain 269 312 IPR001841 -
Alju01g1474 388 Pfam Zinc-ribbon 317 375 IPR039512 -
Alju01g1474 388 Gene3D - 341 384 - -
Alju01g1474 388 FunFam RING finger and CHY zinc finger domain-containing protein 1 341 386 - -
Alju01g1474 388 ProSiteProfiles Zinc finger CHY-type profile. 127 203 IPR008913 GO:0008270
Alju01g1474 388 MobiDBLite consensus disorder prediction 1 25 - -
Alju01g1474 388 SUPERFAMILY RING/U-box 268 319 - -
Alju01g1474 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1474 Alju-ChrAlju01 11788598 11794579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1474 132 387 C2H2 Transcription Factor Family AT3G18290 40.152 7.70e-54 190