Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1471 ATGCCAAAACACGCTCATACTGTTCACGCCACCCATTATTCACTTATTAACTCCCGCTCTTATCCTTTGCTTCTTCCATCATCCGCACTTAGACACCAGAACAAGAAGAACAACGACATGAAAGAAGCAGCTTTAATTATGGAGGTCACAGGCGGCCAAGAACTTGTGGTGTGGAATAAGGATCATCAAGCCCAACAAGTCATCAAGGGCAAGCGCACCAAGCGTCCCAGGCTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTGTTCCAGCGCCGGCGGAAGAGCCAGCACCGACGACCATTCCGGTGGATCATCATCAGTAGTAGATATGGCTACAACCTCCACCGATCAATTGAGGGTGAGTACTGAAGAAGAGGACATGGCTAATTGTTTGATCCTTCTGGCTCAAGGCCATAATACACGTCATGAGCCTTCCTCCCACAACAACGACGACAAGGCTTCCTCGGGGATGTACTTATATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGTCACAGAGCCAGTCACAAGAAAACAAAGCCCAACAATTCTGAAGAAAAGCTTCAGGCAGTTGCATTTGCGAACGAAGAGGCTCATCATCACCAACCCTGTGACCCCACCGGCACAAGCTTCGTCCTTTCCTTGCAGATATCAAATAGCAGCCATAATAACACTAATAATAAGTCCAAGGTTCACGAGTGTTCTATTTGTGGGGTTGAGTTTACTTCCGGGCAGGCTTTAGGGGGTCATATGAGGCGTCACAGAACATTGGTCAACAATTCTGCAGCAACGGCGTGTACAGGGAATAATAATTCTCAACTCCAGCCAACCAACAAGCCCGCCACCAAGAATGTTTTGAAGTTGGATTTGAATCTTCCTGCACCAGAAGATGATCACAGAGAATCCAAGGTGCCTTTTCAGTCTAAAGACAATGTTCTTGTTTTCTCTGCCTCTTCTTTGGTGGACTGCCATTATTGA 1002 0.475 MPKHAHTVHATHYSLINSRSYPLLLPSSALRHQNKKNNDMKEAALIMEVTGGQELVVWNKDHQAQQVIKGKRTKRPRLPSPLRLSMASSCSSAGGRASTDDHSGGSSSVVDMATTSTDQLRVSTEEEDMANCLILLAQGHNTRHEPSSHNNDDKASSGMYLYQCKTCDRCFPSFQALGGHRASHKKTKPNNSEEKLQAVAFANEEAHHHQPCDPTGTSFVLSLQISNSSHNNTNNKSKVHECSICGVEFTSGQALGGHMRRHRTLVNNSAATACTGNNNSQLQPTNKPATKNVLKLDLNLPAPEDDHRESKVPFQSKDNVLVFSASSLVDCHY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1471 333 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Alju01g1471 333 SMART c2h2final6 162 184 IPR013087 -
Alju01g1471 333 SMART c2h2final6 240 262 IPR013087 -
Alju01g1471 333 MobiDBLite consensus disorder prediction 84 113 - -
Alju01g1471 333 SUPERFAMILY beta-beta-alpha zinc fingers 161 262 IPR036236 -
Alju01g1471 333 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Alju01g1471 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 262 IPR013087 -
Alju01g1471 333 PANTHER ZINC FINGER PROTEIN ZAT5 114 310 - -
Alju01g1471 333 MobiDBLite consensus disorder prediction 67 113 - -
Alju01g1471 333 Pfam C2H2-type zinc finger 239 263 - -
Alju01g1471 333 Pfam C2H2-type zinc finger 162 186 - -
Alju01g1471 333 Gene3D Classic Zinc Finger 219 298 - -
Alju01g1471 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1471 Alju-ChrAlju01 11759832 11760833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1471 67 333 C2H2 Transcription Factor Family AT5G03510 42.907 9.81e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1471 zf-C2H2_6 5.7e-12 CL0361