Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1467 ATGGATCGAGACTGGGGTTCAAAGCCGGGTAGTGGAGGAGCCGCCTCCGCTCAGAATGAGGCCATCGACCGTCGAGAGCGTCTTCGCCGACTTGCCCTCGAGACTATTGATCTTGCTAAAGACCCCTATTTCATGCGCAATCATCTGGGGAGCTACGAGTGCAAGCTTTGTCTCACCTTACACAACAACGAGGGCAATTACTTGGCCCACACACAGGGTAAGAGACATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTTTCGGTTCGCAAGACAGTCAAAATTGGTCGGCCTGGGTACCGTGTGACTAAGCAATTTGATCCAGAGACAAATCAGAGATCTCTTCTTTTTCAGATTGAATATCCTGAGATTGAAGAATTCACAAAGCCAAGGCATAGATTTATGTCTTCTTATGAGCAGAGGGTTCAACCCTTTGACAAAAGATATCAATATCTTTTGTTTGCAGCTGAACCGTACGAGACAATTGCTTTTAAGGTTCCTAGCACAGAGATTGACAAGTCCACGCCAAAGTTTTTCTCACATTGGGACTCAGACTCAAAAATGTTCACGTTGCAATTATATTTCAAACCCAAGCCACCGGAGGCAAACAAACCACAGCCTCCACCTACAGCCAATGGCATAGCGGCACCTGGTGTCCCACCAAGGCCTGCTCCGCCGCCGCCTCAAGCTCCGCTTCCTCCTCCTCCTCCACTACCACAAGGACTACCTCCTGGTGCAGCTGCAGGGAATCCTCCTAGAGCCCCTCCGCCTCCAATGCCTGGATCATTGCCGCCGCATCCTCCTCCTATGTCAAATGGCCCTCCACCTGCACCTCCTGGCGGAATGCCACCTCAACCCCCTGTTGTGAGCGGTTCGGCAGCTAGTTTCAACATGGGTTCTAGGCCCCCTTCAATGCCACCTCCCCAAAATTATTTTGCCCGACAAATGCAAGGCCAAGGTGTTCGCCCACCTCCACCACCTCCTAGCATGGGATAG 1041 0.5187 MDRDWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETNQRSLLFQIEYPEIEEFTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPPTANGIAAPGVPPRPAPPPPQAPLPPPPPLPQGLPPGAAAGNPPRAPPPPMPGSLPPHPPPMSNGPPPAPPGGMPPQPPVVSGSAASFNMGSRPPSMPPPQNYFARQMQGQGVRPPPPPPSMG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1467 346 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Alju01g1467 346 Pfam Zinc-finger of C2H2 type 52 76 - -
Alju01g1467 346 MobiDBLite consensus disorder prediction 215 301 - -
Alju01g1467 346 SMART CactinC_cactus_3 89 217 - -
Alju01g1467 346 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Alju01g1467 346 Gene3D Classic Zinc Finger 46 89 - -
Alju01g1467 346 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Alju01g1467 346 MobiDBLite consensus disorder prediction 212 346 - -
Alju01g1467 346 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Alju01g1467 346 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 344 - -
Alju01g1467 346 Gene3D - 93 218 - -
Alju01g1467 346 MobiDBLite consensus disorder prediction 1 21 - -
Alju01g1467 346 PRINTS Proline rich extensin signature 236 252 - -
Alju01g1467 346 PRINTS Proline rich extensin signature 255 272 - -
Alju01g1467 346 PRINTS Proline rich extensin signature 215 236 - -
Alju01g1467 346 PRINTS Proline rich extensin signature 273 298 - -
Alju01g1467 346 FunFam Splicing factor 3a subunit 2 94 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1467 Alju-ChrAlju01 11734450 11738071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1467 1 229 C2H2 Transcription Factor Family AT2G32600 87.336 6.27e-141 399